Analysis of interatomic Contacts of Structural Units in PDB entry:
4DNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DNX entry

There are 2 chains in PDB entry 4DNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 396
B
 MET 1GLN 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4DNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 29Right-handed alpha
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
60 71Right-handed alpha
Helix 4
4
A
90 94Right-handed 310
Helix 5
5
A
124 137Right-handed alpha
Helix 6
6
A
143 150Right-handed alpha
Helix 7
7
A
166 173Right-handed alpha
Helix 8
8
A
179 191Right-handed alpha
Helix 9
9
A
205 220Right-handed alpha
Helix 10
10
A
239 255Right-handed alpha
Helix 11
11
A
273 288Right-handed alpha
Helix 12
12
A
308 317Right-handed alpha
Helix 13
13
A
346 348Right-handed 310
Helix 14
14
A
352 354Right-handed 310
Helix 15
15
A
360 370Right-handed alpha
Helix 16
16
A
380 394Right-handed alpha
Helix 17
17
B
17 29Right-handed alpha
Helix 18
18
B
37 49Right-handed alpha
Helix 19
19
B
60 71Right-handed alpha
Helix 20
20
B
90 94Right-handed 310
Helix 21
21
B
124 137Right-handed alpha
Helix 22
22
B
143 150Right-handed alpha
Helix 23
23
B
166 173Right-handed alpha
Helix 24
24
B
179 191Right-handed alpha
Helix 25
25
B
205 220Right-handed alpha
Helix 26
26
B
239 255Right-handed alpha
Helix 27
27
B
273 288Right-handed alpha
Helix 28
28
B
308 317Right-handed alpha
Helix 29
29
B
346 348Right-handed 310
Helix 30
30
B
352 354Right-handed 310
Helix 31
31
B
360 369Right-handed alpha
Helix 32
32
B
380 393Right-handed alpha
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There are 8 sheets in PDB entry 4DNX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
98 102parallel
Strand 3
A
111 116anti-parallel
Strand 4
A
155 163anti-parallel
Strand 5
A
86 87anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
155 163anti-parallel
Strand 3
A
119 122anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 266first strand
Strand 2
A
223 230parallel
Strand 3
A
195 200parallel
Strand 4
A
291 294parallel
Strand 5
A
326 329parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
333 336anti-parallel
Strand 3
A
356 357anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
98 102parallel
Strand 3
B
111 116anti-parallel
Strand 4
B
155 163anti-parallel
Strand 5
B
86 87anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
155 163anti-parallel
Strand 3
B
119 122anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 266first strand
Strand 2
B
223 230parallel
Strand 3
B
195 198parallel
Strand 4
B
291 294parallel
Strand 5
B
326 329parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 344first strand
Strand 2
B
333 336anti-parallel
Strand 3
B
356 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il