Analysis of interatomic Contacts of Structural Units in PDB entry:
4DO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DO1 entry

There are 4 chains in PDB entry 4DO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17ALA 409
B
 THR 17ALA 409
C
 THR 17ALA 409
D
 THR 17ALA 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 4DO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 33Right-handed alpha
Helix 2
2
A
34 45Right-handed alpha
Helix 3
3
A
60 69Right-handed alpha
Helix 4
4
A
105 116Right-handed alpha
Helix 5
5
A
117 143Right-handed alpha
Helix 6
6
A
153 165Right-handed alpha
Helix 7
7
A
170 172Right-handed 310
Helix 8
8
A
173 185Right-handed alpha
Helix 9
9
A
189 198Right-handed alpha
Helix 10
10
A
199 210Right-handed alpha
Helix 11
11
A
211 215Right-handed 310
Helix 12
12
A
219 227Right-handed alpha
Helix 13
13
A
236 249Right-handed alpha
Helix 14
14
A
250 267Right-handed alpha
Helix 15
15
A
267 277Right-handed alpha
Helix 16
16
A
280 293Right-handed alpha
Helix 17
17
A
323 327Right-handed alpha
Helix 18
18
A
360 378Right-handed alpha
Helix 19
19
B
27 33Right-handed alpha
Helix 20
20
B
34 45Right-handed alpha
Helix 21
21
B
60 69Right-handed alpha
Helix 22
22
B
105 116Right-handed alpha
Helix 23
23
B
117 143Right-handed alpha
Helix 24
24
B
153 165Right-handed alpha
Helix 25
25
B
170 172Right-handed 310
Helix 26
26
B
173 185Right-handed alpha
Helix 27
27
B
189 198Right-handed alpha
Helix 28
28
B
199 210Right-handed alpha
Helix 29
29
B
211 215Right-handed 310
Helix 30
30
B
219 227Right-handed alpha
Helix 31
31
B
236 249Right-handed alpha
Helix 32
32
B
250 267Right-handed alpha
Helix 33
33
B
267 277Right-handed alpha
Helix 34
34
B
280 293Right-handed alpha
Helix 35
35
B
323 327Right-handed alpha
Helix 36
36
B
360 378Right-handed alpha
Helix 37
37
C
27 33Right-handed alpha
Helix 38
38
C
34 45Right-handed alpha
Helix 39
39
C
60 69Right-handed alpha
Helix 40
40
C
105 116Right-handed alpha
Helix 41
41
C
117 143Right-handed alpha
Helix 42
42
C
153 165Right-handed alpha
Helix 43
43
C
170 172Right-handed 310
Helix 44
44
C
173 185Right-handed alpha
Helix 45
45
C
189 198Right-handed alpha
Helix 46
46
C
199 210Right-handed alpha
Helix 47
47
C
211 215Right-handed 310
Helix 48
48
C
219 227Right-handed alpha
Helix 49
49
C
236 249Right-handed alpha
Helix 50
50
C
250 267Right-handed alpha
Helix 51
51
C
267 277Right-handed alpha
Helix 52
52
C
280 293Right-handed alpha
Helix 53
53
C
323 327Right-handed alpha
Helix 54
54
C
360 378Right-handed alpha
Helix 55
55
D
27 33Right-handed alpha
Helix 56
56
D
34 45Right-handed alpha
Helix 57
57
D
60 69Right-handed alpha
Helix 58
58
D
105 116Right-handed alpha
Helix 59
59
D
117 143Right-handed alpha
Helix 60
60
D
153 165Right-handed alpha
Helix 61
61
D
170 172Right-handed 310
Helix 62
62
D
173 185Right-handed alpha
Helix 63
63
D
189 198Right-handed alpha
Helix 64
64
D
199 210Right-handed alpha
Helix 65
65
D
211 215Right-handed 310
Helix 66
66
D
219 227Right-handed alpha
Helix 67
67
D
236 249Right-handed alpha
Helix 68
68
D
250 267Right-handed alpha
Helix 69
69
D
267 277Right-handed alpha
Helix 70
70
D
280 293Right-handed alpha
Helix 71
71
D
323 327Right-handed alpha
Helix 72
72
D
360 378Right-handed alpha
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There are 16 sheets in PDB entry 4DO1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
48 50parallel
Strand 3
A
55 58anti-parallel
Strand 4
A
318 322parallel
Strand 5
A
297 302anti-parallel
Strand 6
A
74 75anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
379 384anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
311 313anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
398 401anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
48 50parallel
Strand 3
B
55 58anti-parallel
Strand 4
B
318 322parallel
Strand 5
B
297 302anti-parallel
Strand 6
B
74 75anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
403 408anti-parallel
Strand 3
B
379 384anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
311 313anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 391first strand
Strand 2
B
398 401anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 21first strand
Strand 2
C
48 50parallel
Strand 3
C
55 58anti-parallel
Strand 4
C
318 322parallel
Strand 5
C
297 302anti-parallel
Strand 6
C
74 75anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
144 146first strand
Strand 2
C
403 408anti-parallel
Strand 3
C
379 384anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
306 308first strand
Strand 2
C
311 313anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
389 391first strand
Strand 2
C
398 401anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
48 50parallel
Strand 3
D
55 58anti-parallel
Strand 4
D
318 322parallel
Strand 5
D
297 302anti-parallel
Strand 6
D
74 75anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
144 146first strand
Strand 2
D
403 408anti-parallel
Strand 3
D
379 384anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
306 308first strand
Strand 2
D
311 313anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
389 391first strand
Strand 2
D
398 401anti-parallel
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