Analysis of interatomic Contacts of Structural Units in PDB entry:
4DO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DO6 entry

There are 2 chains in PDB entry 4DO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18ASN 405
B
 LEU 18HIS 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4DO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 37Right-handed alpha
Helix 2
2
A
51 65Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
134 136Right-handed 310
Helix 6
6
A
137 148Right-handed alpha
Helix 7
7
A
161 179Right-handed alpha
Helix 8
8
A
188 193Right-handed alpha
Helix 9
9
A
201 209Right-handed alpha
Helix 10
10
A
221 235Right-handed alpha
Helix 11
11
A
235 240Right-handed alpha
Helix 12
12
A
241 243Right-handed 310
Helix 13
13
A
262 276Right-handed alpha
Helix 14
14
A
290 298Right-handed alpha
Helix 15
15
A
299 307Right-handed alpha
Helix 16
16
A
332 334Right-handed 310
Helix 17
17
A
355 359Right-handed 310
Helix 18
18
B
32 37Right-handed alpha
Helix 19
19
B
51 65Right-handed alpha
Helix 20
20
B
66 71Right-handed alpha
Helix 21
21
B
101 112Right-handed alpha
Helix 22
22
B
134 136Right-handed 310
Helix 23
23
B
137 149Right-handed alpha
Helix 24
24
B
161 179Right-handed alpha
Helix 25
25
B
189 194Right-handed 310
Helix 26
26
B
201 209Right-handed alpha
Helix 27
27
B
221 235Right-handed alpha
Helix 28
28
B
235 240Right-handed alpha
Helix 29
29
B
241 243Right-handed 310
Helix 30
30
B
262 276Right-handed alpha
Helix 31
31
B
290 298Right-handed alpha
Helix 32
32
B
299 307Right-handed alpha
Helix 33
33
B
332 334Right-handed 310
Helix 34
34
B
354 359Right-handed 310
Helix 35
35
B
403 411Right-handed alpha
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There are 8 sheets in PDB entry 4DO6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
211 213parallel
Strand 3
A
184 187parallel
Strand 4
A
152 156parallel
Strand 5
A
115 121parallel
Strand 6
A
74 76parallel
Strand 7
A
28 31parallel
Strand 8
A
280 282parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
91 93anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
324 330anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
395 402anti-parallel
Strand 5
A
366 370anti-parallel
Strand 6
A
376 380anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 353first strand
Strand 2
A
386 390anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
211 213parallel
Strand 3
B
184 187parallel
Strand 4
B
152 156parallel
Strand 5
B
115 121parallel
Strand 6
B
74 76parallel
Strand 7
B
28 31parallel
Strand 8
B
280 282parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
91 93anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 319first strand
Strand 2
B
324 330anti-parallel
Strand 3
B
336 342anti-parallel
Strand 4
B
395 402anti-parallel
Strand 5
B
366 370anti-parallel
Strand 6
B
376 380anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 353first strand
Strand 2
B
386 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il