Analysis of interatomic Contacts of Structural Units in PDB entry:
4DOE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DOE entry

There is 1 chain in PDB entry 4DOE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLU 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4DOE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 42Right-handed alpha
Helix 2
2
A
64 68Right-handed 310
Helix 3
3
A
85 109Right-handed alpha
Helix 4
4
A
111 129Right-handed alpha
Helix 5
5
A
142 148Right-handed alpha
Helix 6
6
A
152 156Right-handed 310
Helix 7
7
A
171 189Right-handed alpha
Helix 8
8
A
193 215Right-handed alpha
Helix 9
9
A
233 249Right-handed alpha
Helix 10
10
A
250 260Right-handed alpha
Helix 11
11
A
261 264Right-handed 310
Helix 12
12
A
284 297Right-handed alpha
Helix 13
13
A
298 312Right-handed alpha
Helix 14
14
A
335 352Right-handed alpha
Helix 15
15
A
357 377Right-handed alpha
Helix 16
16
A
397 402Right-handed alpha
Helix 17
17
A
445 464Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DOE.

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
135 140anti-parallel
Strand 3
A
162 166anti-parallel
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