Analysis of interatomic Contacts of Structural Units in PDB entry:
4DOM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DOM entry

There are 8 chains in PDB entry 4DOM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 156ILE 165
A
 TYR 167LEU 189
A
 LEU 191GLU 213
A
 ARG 215GLU 232
A
 ASP 234THR 237
A
 PHE 239ILE 255
A
 TYR 257TYR 257
A
 ALA 259PRO 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4DOM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
168 170Right-handed 310
Helix 2
2
A
171 184Right-handed alpha
Helix 3
3
A
195 199Right-handed 310
Helix 4
4
A
208 210Right-handed 310
Helix 5
5
A
211 215Right-handed alpha
Helix 6
6
A
224 229Right-handed alpha
Helix 7
7
A
230 243Right-handed alpha
Helix 8
8
A
247 251Right-handed alpha
Helix 9
9
A
265 269Right-handed 310
Helix 10
10
A
278 282Right-handed 310
Helix 11
11
A
284 295Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DOM.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
191 193parallel
Strand 3
A
161 166parallel
Strand 4
A
216 223parallel
Strand 5
A
252 256parallel
Strand 6
A
274 275parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il