Analysis of interatomic Contacts of Structural Units in PDB entry:
4DOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DOV entry

There are 2 chains in PDB entry 4DOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12PRO 168
C
 ARG 11PRO 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4DOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
92 94Right-handed 310
Helix 2
2
A
98 103Right-handed 310
Helix 3
3
C
92 94Right-handed 310
Helix 4
4
C
95 100Right-handed alpha
Helix 5
5
C
101 103Right-handed 310
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There are 9 sheets in PDB entry 4DOV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
43 47anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
63 73anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
128 136anti-parallel
Strand 5
A
152 159parallel
Strand 6
A
164 166anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
63 73anti-parallel
Strand 3
A
122 124first strand
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
110 114parallel
Strand 4
A
80 90anti-parallel
Strand 5
A
122 124anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 17first strand
Strand 2
C
33 37anti-parallel
Strand 3
C
43 47anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
63 73anti-parallel
Strand 3
C
51 54anti-parallel
Strand 4
C
128 132anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 132first strand
Strand 2
C
51 54anti-parallel
Strand 3
C
63 73anti-parallel
Strand 4
C
80 90anti-parallel
Strand 5
C
110 114anti-parallel
Strand 6
C
153 159parallel
Strand 7
C
134 136parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
134 136first strand
Strand 2
C
153 159parallel
Strand 3
C
164 166anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 166first strand
Strand 2
C
153 159anti-parallel
Strand 3
C
110 114parallel
Strand 4
C
80 90anti-parallel
Strand 5
C
122 124anti-parallel
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