Analysis of interatomic Contacts of Structural Units in PDB entry:
4DP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DP3 entry

There are 2 chains in PDB entry 4DP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	MET 606
B	MET 1	ASP 605

There are 50 helices in PDB entry 4DP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	9	Right-handed alpha
Helix 2	2	A	26	30	Right-handed 310
Helix 3	3	A	33	35	Right-handed 310
Helix 4	4	A	51	64	Right-handed alpha
Helix 5	5	A	66	68	Right-handed 310
Helix 6	6	A	69	82	Right-handed alpha
Helix 7	7	A	106	112	Right-handed alpha
Helix 8	8	A	113	117	Right-handed 310
Helix 9	9	A	132	136	Right-handed 310
Helix 10	10	A	145	156	Right-handed alpha
Helix 11	11	A	166	176	Right-handed alpha
Helix 12	12	A	285	294	Right-handed alpha
Helix 13	13	A	309	311	Right-handed 310
Helix 14	14	A	312	318	Right-handed alpha
Helix 15	15	A	324	339	Right-handed alpha
Helix 16	16	A	376	388	Right-handed alpha
Helix 17	17	A	392	398	Right-handed alpha
Helix 18	18	A	405	408	Right-handed 310
Helix 19	19	A	409	416	Right-handed alpha
Helix 20	20	A	429	437	Right-handed alpha
Helix 21	21	A	454	466	Right-handed alpha
Helix 22	22	A	481	485	Right-handed 310
Helix 23	23	A	516	536	Right-handed alpha
Helix 24	24	A	556	564	Right-handed alpha
Helix 25	25	A	582	586	Right-handed 310
Helix 26	26	A	587	589	Right-handed 310
Helix 27	27	B	4	9	Right-handed alpha
Helix 28	28	B	33	35	Right-handed 310
Helix 29	29	B	51	64	Right-handed alpha
Helix 30	30	B	66	69	Right-handed 310
Helix 31	31	B	70	82	Right-handed alpha
Helix 32	32	B	106	111	Right-handed alpha
Helix 33	33	B	113	117	Right-handed 310
Helix 34	34	B	146	154	Right-handed alpha
Helix 35	35	B	166	176	Right-handed alpha
Helix 36	36	B	284	294	Right-handed alpha
Helix 37	37	B	308	311	Right-handed 310
Helix 38	38	B	312	317	Right-handed alpha
Helix 39	39	B	324	339	Right-handed alpha
Helix 40	40	B	376	389	Right-handed alpha
Helix 41	41	B	392	399	Right-handed alpha
Helix 42	42	B	404	408	Right-handed 310
Helix 43	43	B	409	416	Right-handed alpha
Helix 44	44	B	429	437	Right-handed alpha
Helix 45	45	B	454	466	Right-handed alpha
Helix 46	46	B	481	485	Right-handed 310
Helix 47	47	B	516	535	Right-handed alpha
Helix 48	48	B	556	565	Right-handed alpha
Helix 49	49	B	582	586	Right-handed 310
Helix 50	50	B	587	589	Right-handed 310

There are 8 sheets in PDB entry 4DP3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	122	127	parallel
Strand 3	A	100	105	parallel
Strand 4	A	161	165	parallel
Strand 5	A	11	20	parallel
Strand 6	A	181	191	parallel
Strand 7	A	220	228	anti-parallel
Strand 8	A	214	215	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	11	20	anti-parallel
Strand 4	A	181	191	parallel
Strand 5	A	220	228	anti-parallel
Strand 6	A	205	210	anti-parallel
Strand 7	A	320	321	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	342	first strand
Strand 2	A	350	361	anti-parallel
Strand 3	A	539	553	anti-parallel
Strand 4	A	502	513	parallel
Strand 5	A	491	499	anti-parallel
Strand 6	A	473	475	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	576	first strand
Strand 2	A	591	594	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	143	first strand
Strand 2	B	122	127	parallel
Strand 3	B	99	105	parallel
Strand 4	B	158	165	parallel
Strand 5	B	11	20	parallel
Strand 6	B	181	191	parallel
Strand 7	B	220	228	anti-parallel
Strand 8	B	214	215	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	37	41	anti-parallel
Strand 3	B	11	20	anti-parallel
Strand 4	B	181	191	parallel
Strand 5	B	220	228	anti-parallel
Strand 6	B	205	210	anti-parallel
Strand 7	B	320	321	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	350	361	anti-parallel
Strand 3	B	539	553	anti-parallel
Strand 4	B	502	513	parallel
Strand 5	B	491	499	anti-parallel
Strand 6	B	473	475	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	576	first strand
Strand 2	B	591	594	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DP3