Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DPG entry

There are 3 chains in PDB entry 4DPG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 71	PRO 575
B	VAL 71	GLU 576
C	VAL 71	ASN 324

There are152 helices in PDB entry 4DPG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	72	91	Right-handed alpha
Helix 2	2	A	104	113	Right-handed alpha
Helix 3	3	A	165	176	Right-handed alpha
Helix 4	4	A	222	229	Right-handed alpha
Helix 5	5	A	229	237	Right-handed alpha
Helix 6	6	A	237	261	Right-handed alpha
Helix 7	7	A	288	291	Right-handed 310
Helix 8	8	A	300	311	Right-handed alpha
Helix 9	9	A	346	367	Right-handed alpha
Helix 10	10	A	396	404	Right-handed alpha
Helix 11	11	A	410	414	Right-handed 310
Helix 12	12	A	416	430	Right-handed alpha
Helix 13	13	A	439	452	Right-handed alpha
Helix 14	14	A	453	456	Right-handed 310
Helix 15	15	A	466	470	Right-handed 310
Helix 16	16	A	504	521	Right-handed alpha
Helix 17	17	A	530	541	Right-handed alpha
Helix 18	18	A	551	559	Right-handed alpha
Helix 19	19	A	563	568	Right-handed 310
Helix 20	20	B	72	90	Right-handed alpha
Helix 21	21	B	104	113	Right-handed alpha
Helix 22	22	B	161	163	Right-handed 310
Helix 23	23	B	165	176	Right-handed alpha
Helix 24	24	B	222	229	Right-handed alpha
Helix 25	25	B	229	237	Right-handed alpha
Helix 26	26	B	237	261	Right-handed alpha
Helix 27	27	B	300	310	Right-handed alpha
Helix 28	28	B	346	367	Right-handed alpha
Helix 29	29	B	396	405	Right-handed alpha
Helix 30	30	B	410	414	Right-handed 310
Helix 31	31	B	416	430	Right-handed alpha
Helix 32	32	B	439	452	Right-handed alpha
Helix 33	33	B	453	456	Right-handed 310
Helix 34	34	B	466	470	Right-handed 310
Helix 35	35	B	504	521	Right-handed alpha
Helix 36	36	B	530	539	Right-handed alpha
Helix 37	37	B	551	559	Right-handed alpha
Helix 38	38	B	563	567	Right-handed 310
Helix 39	39	C	72	91	Right-handed alpha
Helix 40	40	C	104	113	Right-handed alpha
Helix 41	41	C	165	176	Right-handed alpha
Helix 42	42	C	222	229	Right-handed alpha
Helix 43	43	C	229	237	Right-handed alpha
Helix 44	44	C	237	261	Right-handed alpha
Helix 45	45	C	288	291	Right-handed 310
Helix 46	46	C	300	311	Right-handed alpha
Helix 47	47	C	346	367	Right-handed alpha
Helix 48	48	C	396	404	Right-handed alpha
Helix 49	49	C	410	414	Right-handed 310
Helix 50	50	C	416	430	Right-handed alpha
Helix 51	51	C	439	452	Right-handed alpha
Helix 52	52	C	453	456	Right-handed 310
Helix 53	53	C	466	470	Right-handed 310
Helix 54	54	C	504	521	Right-handed alpha
Helix 55	55	C	530	541	Right-handed alpha
Helix 56	56	C	551	559	Right-handed alpha
Helix 57	57	C	563	568	Right-handed 310
Helix 58	58	D	72	90	Right-handed alpha
Helix 59	59	D	104	113	Right-handed alpha
Helix 60	60	D	161	163	Right-handed 310
Helix 61	61	D	165	176	Right-handed alpha
Helix 62	62	D	222	229	Right-handed alpha
Helix 63	63	D	229	237	Right-handed alpha
Helix 64	64	D	237	261	Right-handed alpha
Helix 65	65	D	300	310	Right-handed alpha
Helix 66	66	D	346	367	Right-handed alpha
Helix 67	67	D	396	405	Right-handed alpha
Helix 68	68	D	410	414	Right-handed 310
Helix 69	69	D	416	430	Right-handed alpha
Helix 70	70	D	439	452	Right-handed alpha
Helix 71	71	D	453	456	Right-handed 310
Helix 72	72	D	466	470	Right-handed 310
Helix 73	73	D	504	521	Right-handed alpha
Helix 74	74	D	530	539	Right-handed alpha
Helix 75	75	D	551	559	Right-handed alpha
Helix 76	76	D	563	567	Right-handed 310
Helix 77	77	E	73	91	Right-handed alpha
Helix 78	78	E	104	113	Right-handed alpha
Helix 79	79	E	165	176	Right-handed alpha
Helix 80	80	E	222	229	Right-handed alpha
Helix 81	81	E	229	237	Right-handed alpha
Helix 82	82	E	237	261	Right-handed alpha
Helix 83	83	E	288	291	Right-handed 310
Helix 84	84	E	300	311	Right-handed alpha
Helix 85	85	E	346	367	Right-handed alpha
Helix 86	86	E	396	404	Right-handed alpha
Helix 87	87	E	410	414	Right-handed 310
Helix 88	88	E	416	430	Right-handed alpha
Helix 89	89	E	439	452	Right-handed alpha
Helix 90	90	E	453	456	Right-handed 310
Helix 91	91	E	466	470	Right-handed 310
Helix 92	92	E	504	521	Right-handed alpha
Helix 93	93	E	530	541	Right-handed alpha
Helix 94	94	E	551	559	Right-handed alpha
Helix 95	95	E	563	568	Right-handed 310
Helix 96	96	F	72	90	Right-handed alpha
Helix 97	97	F	104	113	Right-handed alpha
Helix 98	98	F	161	163	Right-handed 310
Helix 99	99	F	165	176	Right-handed alpha
Helix 100	100	F	222	229	Right-handed alpha
Helix 101	101	F	229	237	Right-handed alpha
Helix 102	102	F	237	261	Right-handed alpha
Helix 103	103	F	300	310	Right-handed alpha
Helix 104	104	F	346	367	Right-handed alpha
Helix 105	105	F	396	405	Right-handed alpha
Helix 106	106	F	410	414	Right-handed 310
Helix 107	107	F	416	430	Right-handed alpha
Helix 108	108	F	439	452	Right-handed alpha
Helix 109	109	F	453	456	Right-handed 310
Helix 110	110	F	466	470	Right-handed 310
Helix 111	111	F	504	521	Right-handed alpha
Helix 112	112	F	530	539	Right-handed alpha
Helix 113	113	F	551	559	Right-handed alpha
Helix 114	114	F	563	567	Right-handed 310
Helix 115	115	G	73	91	Right-handed alpha
Helix 116	116	G	104	113	Right-handed alpha
Helix 117	117	G	165	176	Right-handed alpha
Helix 118	118	G	222	229	Right-handed alpha
Helix 119	119	G	229	237	Right-handed alpha
Helix 120	120	G	237	261	Right-handed alpha
Helix 121	121	G	288	291	Right-handed 310
Helix 122	122	G	300	311	Right-handed alpha
Helix 123	123	G	346	367	Right-handed alpha
Helix 124	124	G	396	404	Right-handed alpha
Helix 125	125	G	410	414	Right-handed 310
Helix 126	126	G	416	430	Right-handed alpha
Helix 127	127	G	439	452	Right-handed alpha
Helix 128	128	G	453	456	Right-handed 310
Helix 129	129	G	466	470	Right-handed 310
Helix 130	130	G	504	521	Right-handed alpha
Helix 131	131	G	530	541	Right-handed alpha
Helix 132	132	G	551	559	Right-handed alpha
Helix 133	133	G	563	568	Right-handed 310
Helix 134	134	H	72	90	Right-handed alpha
Helix 135	135	H	104	113	Right-handed alpha
Helix 136	136	H	161	163	Right-handed 310
Helix 137	137	H	165	176	Right-handed alpha
Helix 138	138	H	222	229	Right-handed alpha
Helix 139	139	H	229	237	Right-handed alpha
Helix 140	140	H	237	261	Right-handed alpha
Helix 141	141	H	300	310	Right-handed alpha
Helix 142	142	H	346	367	Right-handed alpha
Helix 143	143	H	396	405	Right-handed alpha
Helix 144	144	H	410	414	Right-handed 310
Helix 145	145	H	416	430	Right-handed alpha
Helix 146	146	H	439	452	Right-handed alpha
Helix 147	147	H	453	456	Right-handed 310
Helix 148	148	H	466	470	Right-handed 310
Helix 149	149	H	504	521	Right-handed alpha
Helix 150	150	H	530	539	Right-handed alpha
Helix 151	151	H	551	559	Right-handed alpha
Helix 152	152	H	563	567	Right-handed 310

There are 32 sheets in PDB entry 4DPG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	137	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	152	159	anti-parallel
Strand 4	A	196	207	parallel
Strand 5	A	181	190	anti-parallel
Strand 6	A	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	314	322	parallel
Strand 3	A	334	343	anti-parallel
Strand 4	A	544	550	anti-parallel
Strand 5	A	493	500	anti-parallel
Strand 6	A	485	490	anti-parallel
Strand 7	A	460	463	anti-parallel
Strand 8	A	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	292	296	anti-parallel
Strand 3	A	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	137	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	152	159	anti-parallel
Strand 4	B	196	207	parallel
Strand 5	B	181	190	anti-parallel
Strand 6	B	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	314	322	parallel
Strand 3	B	334	343	anti-parallel
Strand 4	B	544	550	anti-parallel
Strand 5	B	493	500	anti-parallel
Strand 6	B	485	490	anti-parallel
Strand 7	B	460	463	anti-parallel
Strand 8	B	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	292	296	anti-parallel
Strand 3	B	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	137	first strand
Strand 2	C	142	149	anti-parallel
Strand 3	C	152	159	anti-parallel
Strand 4	C	196	207	parallel
Strand 5	C	181	190	anti-parallel
Strand 6	C	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	314	322	parallel
Strand 3	C	334	343	anti-parallel
Strand 4	C	544	550	anti-parallel
Strand 5	C	493	500	anti-parallel
Strand 6	C	485	490	anti-parallel
Strand 7	C	460	463	anti-parallel
Strand 8	C	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	292	296	anti-parallel
Strand 3	C	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	373	first strand
Strand 2	C	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	137	first strand
Strand 2	D	142	149	anti-parallel
Strand 3	D	152	159	anti-parallel
Strand 4	D	196	207	parallel
Strand 5	D	181	190	anti-parallel
Strand 6	D	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	314	322	parallel
Strand 3	D	334	343	anti-parallel
Strand 4	D	544	550	anti-parallel
Strand 5	D	493	500	anti-parallel
Strand 6	D	485	490	anti-parallel
Strand 7	D	460	463	anti-parallel
Strand 8	D	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	272	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	373	first strand
Strand 2	D	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	137	first strand
Strand 2	E	142	149	anti-parallel
Strand 3	E	152	159	anti-parallel
Strand 4	E	196	207	parallel
Strand 5	E	181	190	anti-parallel
Strand 6	E	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	265	first strand
Strand 2	E	314	322	parallel
Strand 3	E	334	343	anti-parallel
Strand 4	E	544	550	anti-parallel
Strand 5	E	493	500	anti-parallel
Strand 6	E	485	490	anti-parallel
Strand 7	E	460	463	anti-parallel
Strand 8	E	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	272	first strand
Strand 2	E	292	296	anti-parallel
Strand 3	E	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	373	first strand
Strand 2	E	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	137	first strand
Strand 2	F	142	149	anti-parallel
Strand 3	F	152	159	anti-parallel
Strand 4	F	196	207	parallel
Strand 5	F	181	190	anti-parallel
Strand 6	F	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	264	265	first strand
Strand 2	F	314	322	parallel
Strand 3	F	334	343	anti-parallel
Strand 4	F	544	550	anti-parallel
Strand 5	F	493	500	anti-parallel
Strand 6	F	485	490	anti-parallel
Strand 7	F	460	463	anti-parallel
Strand 8	F	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	272	first strand
Strand 2	F	292	296	anti-parallel
Strand 3	F	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	373	first strand
Strand 2	F	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	137	first strand
Strand 2	G	142	149	anti-parallel
Strand 3	G	152	159	anti-parallel
Strand 4	G	196	207	parallel
Strand 5	G	181	190	anti-parallel
Strand 6	G	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	264	265	first strand
Strand 2	G	314	322	parallel
Strand 3	G	334	343	anti-parallel
Strand 4	G	544	550	anti-parallel
Strand 5	G	493	500	anti-parallel
Strand 6	G	485	490	anti-parallel
Strand 7	G	460	463	anti-parallel
Strand 8	G	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	272	first strand
Strand 2	G	292	296	anti-parallel
Strand 3	G	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	370	373	first strand
Strand 2	G	383	386	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	137	first strand
Strand 2	H	142	149	anti-parallel
Strand 3	H	152	159	anti-parallel
Strand 4	H	196	207	parallel
Strand 5	H	181	190	anti-parallel
Strand 6	H	126	137	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	264	265	first strand
Strand 2	H	314	322	parallel
Strand 3	H	334	343	anti-parallel
Strand 4	H	544	550	anti-parallel
Strand 5	H	493	500	anti-parallel
Strand 6	H	485	490	anti-parallel
Strand 7	H	460	463	anti-parallel
Strand 8	H	392	395	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	271	272	first strand
Strand 2	H	292	296	anti-parallel
Strand 3	H	283	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	370	373	first strand
Strand 2	H	383	386	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DPG

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPG