Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DPH entry

There are 2 chains in PDB entry 4DPH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ALA 608
B
 VAL 5ALA 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 4DPH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 10Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
51 64Right-handed alpha
Helix 4
4
A
66 71Right-handed alpha
Helix 5
5
A
72 82Right-handed alpha
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
113 117Right-handed 310
Helix 8
8
A
132 136Right-handed 310
Helix 9
9
A
145 156Right-handed alpha
Helix 10
10
A
166 176Right-handed alpha
Helix 11
11
A
285 293Right-handed alpha
Helix 12
12
A
308 311Right-handed 310
Helix 13
13
A
312 318Right-handed alpha
Helix 14
14
A
324 339Right-handed alpha
Helix 15
15
A
376 388Right-handed alpha
Helix 16
16
A
392 399Right-handed alpha
Helix 17
17
A
405 408Right-handed 310
Helix 18
18
A
409 416Right-handed alpha
Helix 19
19
A
429 437Right-handed alpha
Helix 20
20
A
454 466Right-handed alpha
Helix 21
21
A
481 485Right-handed 310
Helix 22
22
A
516 536Right-handed alpha
Helix 23
23
A
556 564Right-handed alpha
Helix 24
24
A
582 586Right-handed 310
Helix 25
25
A
587 589Right-handed 310
Helix 26
26
B
6 10Right-handed alpha
Helix 27
27
B
33 37Right-handed 310
Helix 28
28
B
51 64Right-handed alpha
Helix 29
29
B
66 68Right-handed 310
Helix 30
30
B
69 81Right-handed alpha
Helix 31
31
B
106 110Right-handed alpha
Helix 32
32
B
145 148Right-handed 310
Helix 33
33
B
149 155Right-handed alpha
Helix 34
34
B
166 176Right-handed alpha
Helix 35
35
B
284 294Right-handed alpha
Helix 36
36
B
309 311Right-handed 310
Helix 37
37
B
312 317Right-handed alpha
Helix 38
38
B
325 339Right-handed alpha
Helix 39
39
B
376 389Right-handed alpha
Helix 40
40
B
393 398Right-handed alpha
Helix 41
41
B
405 408Right-handed 310
Helix 42
42
B
409 416Right-handed alpha
Helix 43
43
B
429 437Right-handed alpha
Helix 44
44
B
454 466Right-handed alpha
Helix 45
45
B
478 485Right-handed 310
Helix 46
46
B
517 536Right-handed alpha
Helix 47
47
B
556 565Right-handed alpha
Helix 48
48
B
582 586Right-handed 310
Helix 49
49
B
587 589Right-handed 310
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There are 10 sheets in PDB entry 4DPH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
122 127parallel
Strand 3
A
99 105parallel
Strand 4
A
158 163parallel
Strand 5
A
11 20parallel
Strand 6
A
181 191parallel
Strand 7
A
219 228anti-parallel
Strand 8
A
214 216anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
122 127parallel
Strand 3
A
99 105parallel
Strand 4
A
158 163parallel
Strand 5
A
11 20parallel
Strand 6
A
181 191parallel
Strand 7
A
219 228anti-parallel
Strand 8
A
205 210anti-parallel
Strand 9
A
320 321parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
195 196anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
349 361anti-parallel
Strand 3
A
539 553anti-parallel
Strand 4
A
502 513parallel
Strand 5
A
491 499anti-parallel
Strand 6
A
473 475anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
591 594anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
123 127parallel
Strand 3
B
99 105parallel
Strand 4
B
158 165parallel
Strand 5
B
11 20parallel
Strand 6
B
181 191parallel
Strand 7
B
219 228anti-parallel
Strand 8
B
214 216anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
123 127parallel
Strand 3
B
99 105parallel
Strand 4
B
158 165parallel
Strand 5
B
11 20parallel
Strand 6
B
181 191parallel
Strand 7
B
219 228anti-parallel
Strand 8
B
205 210anti-parallel
Strand 9
B
320 321parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
195 196anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 342first strand
Strand 2
B
350 361anti-parallel
Strand 3
B
539 553anti-parallel
Strand 4
B
502 513parallel
Strand 5
B
491 499anti-parallel
Strand 6
B
473 475anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 576first strand
Strand 2
B
591 594anti-parallel
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