Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DPP entry

There are 2 chains in PDB entry 4DPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 59TYR 365
B
 ASN 59TYR 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4DPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 65Right-handed alpha
Helix 2
2
A
83 97Right-handed alpha
Helix 3
3
A
110 114Right-handed 310
Helix 4
4
A
115 131Right-handed alpha
Helix 5
5
A
144 158Right-handed alpha
Helix 6
6
A
174 184Right-handed alpha
Helix 7
7
A
185 189Right-handed 310
Helix 8
8
A
196 201Right-handed alpha
Helix 9
9
A
205 213Right-handed alpha
Helix 10
10
A
226 236Right-handed alpha
Helix 11
11
A
244 246Right-handed 310
Helix 12
12
A
247 255Right-handed alpha
Helix 13
13
A
263 267Right-handed 310
Helix 14
14
A
268 278Right-handed alpha
Helix 15
15
A
281 296Right-handed alpha
Helix 16
16
A
301 311Right-handed alpha
Helix 17
17
A
326 341Right-handed alpha
Helix 18
18
A
342 345Right-handed 310
Helix 19
19
A
355 359Right-handed 310
Helix 20
20
B
60 65Right-handed alpha
Helix 21
21
B
83 97Right-handed alpha
Helix 22
22
B
110 114Right-handed 310
Helix 23
23
B
115 131Right-handed alpha
Helix 24
24
B
144 158Right-handed alpha
Helix 25
25
B
174 187Right-handed alpha
Helix 26
26
B
196 201Right-handed alpha
Helix 27
27
B
205 213Right-handed alpha
Helix 28
28
B
226 236Right-handed alpha
Helix 29
29
B
244 246Right-handed 310
Helix 30
30
B
247 255Right-handed alpha
Helix 31
31
B
263 267Right-handed 310
Helix 32
32
B
268 278Right-handed alpha
Helix 33
33
B
281 296Right-handed alpha
Helix 34
34
B
301 311Right-handed alpha
Helix 35
35
B
326 341Right-handed alpha
Helix 36
36
B
342 345Right-handed 310
Helix 37
37
B
355 359Right-handed 310
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There are 4 sheets in PDB entry 4DPP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 71first strand
Strand 2
A
101 104parallel
Strand 3
A
135 139parallel
Strand 4
A
162 166parallel
Strand 5
A
191 195parallel
Strand 6
A
218 223parallel
Strand 7
A
240 242parallel
Strand 8
A
259 262parallel
Strand 9
A
68 71parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
360 362parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 71first strand
Strand 2
B
101 104parallel
Strand 3
B
135 139parallel
Strand 4
B
162 166parallel
Strand 5
B
191 195parallel
Strand 6
B
218 223parallel
Strand 7
B
240 242parallel
Strand 8
B
259 262parallel
Strand 9
B
68 71parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
360 362parallel
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