Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DPW entry

There are 8 chains in PDB entry 4DPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 326
B	MET 1	ILE 326
C	MET 1	ILE 326
D	MET 1	ILE 326
E	GLY -1	ILE 326
F	MET 1	ILE 326
G	MET 1	ILE 326
H	MET 1	ILE 326

There are 87 helices in PDB entry 4DPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	66	85	Right-handed alpha
Helix 2	2	A	105	122	Right-handed alpha
Helix 3	3	A	127	139	Right-handed alpha
Helix 4	4	A	141	146	Right-handed alpha
Helix 5	5	A	171	174	Right-handed 310
Helix 6	6	A	191	203	Right-handed alpha
Helix 7	7	A	205	227	Right-handed alpha
Helix 8	8	A	228	249	Right-handed alpha
Helix 9	9	A	258	274	Right-handed alpha
Helix 10	10	A	296	306	Right-handed alpha
Helix 11	11	A	309	311	Right-handed 310
Helix 12	12	B	66	85	Right-handed alpha
Helix 13	13	B	105	122	Right-handed alpha
Helix 14	14	B	127	139	Right-handed alpha
Helix 15	15	B	141	146	Right-handed alpha
Helix 16	16	B	171	174	Right-handed 310
Helix 17	17	B	191	203	Right-handed alpha
Helix 18	18	B	205	226	Right-handed alpha
Helix 19	19	B	228	249	Right-handed alpha
Helix 20	20	B	258	273	Right-handed alpha
Helix 21	21	B	294	306	Right-handed alpha
Helix 22	22	B	309	311	Right-handed 310
Helix 23	23	C	66	85	Right-handed alpha
Helix 24	24	C	105	122	Right-handed alpha
Helix 25	25	C	127	139	Right-handed alpha
Helix 26	26	C	140	145	Right-handed 310
Helix 27	27	C	171	174	Right-handed 310
Helix 28	28	C	191	203	Right-handed alpha
Helix 29	29	C	205	227	Right-handed alpha
Helix 30	30	C	228	249	Right-handed alpha
Helix 31	31	C	258	274	Right-handed alpha
Helix 32	32	C	296	306	Right-handed alpha
Helix 33	33	C	309	311	Right-handed 310
Helix 34	34	D	66	85	Right-handed alpha
Helix 35	35	D	105	122	Right-handed alpha
Helix 36	36	D	127	137	Right-handed alpha
Helix 37	37	D	141	146	Right-handed alpha
Helix 38	38	D	171	174	Right-handed 310
Helix 39	39	D	191	203	Right-handed alpha
Helix 40	40	D	205	226	Right-handed alpha
Helix 41	41	D	228	249	Right-handed alpha
Helix 42	42	D	258	274	Right-handed alpha
Helix 43	43	D	294	306	Right-handed alpha
Helix 44	44	D	309	311	Right-handed 310
Helix 45	45	E	66	85	Right-handed alpha
Helix 46	46	E	105	122	Right-handed alpha
Helix 47	47	E	127	137	Right-handed alpha
Helix 48	48	E	138	145	Right-handed 310
Helix 49	49	E	171	174	Right-handed 310
Helix 50	50	E	191	203	Right-handed alpha
Helix 51	51	E	205	227	Right-handed alpha
Helix 52	52	E	228	250	Right-handed alpha
Helix 53	53	E	258	274	Right-handed alpha
Helix 54	54	E	296	306	Right-handed alpha
Helix 55	55	E	309	311	Right-handed 310
Helix 56	56	F	66	85	Right-handed alpha
Helix 57	57	F	105	122	Right-handed alpha
Helix 58	58	F	127	139	Right-handed alpha
Helix 59	59	F	141	146	Right-handed alpha
Helix 60	60	F	171	174	Right-handed 310
Helix 61	61	F	191	203	Right-handed alpha
Helix 62	62	F	205	226	Right-handed alpha
Helix 63	63	F	228	249	Right-handed alpha
Helix 64	64	F	258	274	Right-handed alpha
Helix 65	65	F	294	306	Right-handed alpha
Helix 66	66	F	309	311	Right-handed 310
Helix 67	67	G	66	85	Right-handed alpha
Helix 68	68	G	105	122	Right-handed alpha
Helix 69	69	G	127	137	Right-handed alpha
Helix 70	70	G	139	147	Right-handed 310
Helix 71	71	G	171	174	Right-handed 310
Helix 72	72	G	191	203	Right-handed alpha
Helix 73	73	G	205	226	Right-handed alpha
Helix 74	74	G	228	250	Right-handed alpha
Helix 75	75	G	258	274	Right-handed alpha
Helix 76	76	G	296	305	Right-handed alpha
Helix 77	77	G	309	311	Right-handed 310
Helix 78	78	H	66	85	Right-handed alpha
Helix 79	79	H	105	122	Right-handed alpha
Helix 80	80	H	127	137	Right-handed alpha
Helix 81	81	H	138	147	Right-handed 310
Helix 82	82	H	171	174	Right-handed 310
Helix 83	83	H	191	203	Right-handed alpha
Helix 84	84	H	205	226	Right-handed alpha
Helix 85	85	H	228	248	Right-handed alpha
Helix 86	86	H	258	274	Right-handed alpha
Helix 87	87	H	296	306	Right-handed alpha

There are 32 sheets in PDB entry 4DPW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	57	60	anti-parallel
Strand 3	A	89	97	parallel
Strand 4	A	33	50	anti-parallel
Strand 5	A	150	154	anti-parallel
Strand 6	A	163	166	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	57	60	anti-parallel
Strand 3	A	89	97	parallel
Strand 4	A	33	50	anti-parallel
Strand 5	A	3	16	anti-parallel
Strand 6	A	324	325	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	28	29	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	176	181	anti-parallel
Strand 4	A	313	317	anti-parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	89	97	parallel
Strand 4	B	33	50	anti-parallel
Strand 5	B	150	154	anti-parallel
Strand 6	B	163	167	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	57	60	anti-parallel
Strand 3	B	89	97	parallel
Strand 4	B	33	50	anti-parallel
Strand 5	B	3	16	anti-parallel
Strand 6	B	324	325	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	28	29	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	288	293	anti-parallel
Strand 3	B	176	181	anti-parallel
Strand 4	B	313	317	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	57	60	anti-parallel
Strand 3	C	89	97	parallel
Strand 4	C	33	50	anti-parallel
Strand 5	C	150	154	anti-parallel
Strand 6	C	163	167	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	57	60	anti-parallel
Strand 3	C	89	97	parallel
Strand 4	C	33	50	anti-parallel
Strand 5	C	3	16	anti-parallel
Strand 6	C	324	325	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	28	29	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	281	first strand
Strand 2	C	288	293	anti-parallel
Strand 3	C	176	181	anti-parallel
Strand 4	C	313	317	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	89	96	parallel
Strand 4	D	33	50	anti-parallel
Strand 5	D	150	154	anti-parallel
Strand 6	D	163	167	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	57	60	anti-parallel
Strand 3	D	89	96	parallel
Strand 4	D	33	50	anti-parallel
Strand 5	D	3	16	anti-parallel
Strand 6	D	324	325	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	28	29	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	281	first strand
Strand 2	D	288	293	anti-parallel
Strand 3	D	176	181	anti-parallel
Strand 4	D	313	317	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	57	60	anti-parallel
Strand 3	E	89	97	parallel
Strand 4	E	33	50	anti-parallel
Strand 5	E	150	154	anti-parallel
Strand 6	E	163	166	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	64	first strand
Strand 2	E	57	60	anti-parallel
Strand 3	E	89	97	parallel
Strand 4	E	33	50	anti-parallel
Strand 5	E	3	16	anti-parallel
Strand 6	E	324	325	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	28	29	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	279	281	first strand
Strand 2	E	288	293	anti-parallel
Strand 3	E	176	181	anti-parallel
Strand 4	E	313	317	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	57	60	anti-parallel
Strand 3	F	89	97	parallel
Strand 4	F	33	50	anti-parallel
Strand 5	F	150	154	anti-parallel
Strand 6	F	163	167	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	64	first strand
Strand 2	F	57	60	anti-parallel
Strand 3	F	89	97	parallel
Strand 4	F	33	50	anti-parallel
Strand 5	F	3	16	anti-parallel
Strand 6	F	324	325	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	23	first strand
Strand 2	F	28	29	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	281	first strand
Strand 2	F	288	293	anti-parallel
Strand 3	F	176	181	anti-parallel
Strand 4	F	313	317	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	57	60	anti-parallel
Strand 3	G	89	97	parallel
Strand 4	G	33	50	anti-parallel
Strand 5	G	150	154	anti-parallel
Strand 6	G	163	167	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	57	60	anti-parallel
Strand 3	G	89	97	parallel
Strand 4	G	33	50	anti-parallel
Strand 5	G	3	16	anti-parallel
Strand 6	G	324	325	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	23	first strand
Strand 2	G	28	29	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	278	282	first strand
Strand 2	G	288	293	anti-parallel
Strand 3	G	176	181	anti-parallel
Strand 4	G	313	317	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	57	60	anti-parallel
Strand 3	H	90	96	parallel
Strand 4	H	33	49	anti-parallel
Strand 5	H	150	154	anti-parallel
Strand 6	H	163	167	anti-parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	57	60	anti-parallel
Strand 3	H	90	96	parallel
Strand 4	H	33	49	anti-parallel
Strand 5	H	3	16	anti-parallel
Strand 6	H	324	325	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	23	first strand
Strand 2	H	28	29	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	278	282	first strand
Strand 2	H	288	293	anti-parallel
Strand 3	H	176	181	anti-parallel
Strand 4	H	313	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DPW