Analysis of interatomic Contacts of Structural Units in PDB entry:
4DQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DQ6 entry

There are 2 chains in PDB entry 4DQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 388
B
 MET 1ASN 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4DQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
21 27Right-handed alpha
Helix 3
3
A
44 56Right-handed alpha
Helix 4
4
A
66 82Right-handed alpha
Helix 5
5
A
86 88Right-handed 310
Helix 6
6
A
95 108Right-handed alpha
Helix 7
7
A
122 131Right-handed alpha
Helix 8
8
A
151 159Right-handed alpha
Helix 9
9
A
179 193Right-handed alpha
Helix 10
10
A
215 219Right-handed 310
Helix 11
11
A
220 226Right-handed alpha
Helix 12
12
A
233 238Right-handed alpha
Helix 13
13
A
239 243Right-handed 310
Helix 14
14
A
251 265Right-handed alpha
Helix 15
15
A
271 285Right-handed alpha
Helix 16
16
A
285 311Right-handed alpha
Helix 17
17
A
330 333Right-handed 310
Helix 18
18
A
335 346Right-handed alpha
Helix 19
19
A
355 358Right-handed 310
Helix 20
20
A
372 388Right-handed alpha
Helix 21
21
B
16 21Right-handed alpha
Helix 22
22
B
21 27Right-handed alpha
Helix 23
23
B
44 57Right-handed alpha
Helix 24
24
B
66 82Right-handed alpha
Helix 25
25
B
86 88Right-handed 310
Helix 26
26
B
95 108Right-handed alpha
Helix 27
27
B
122 131Right-handed alpha
Helix 28
28
B
151 159Right-handed alpha
Helix 29
29
B
179 194Right-handed alpha
Helix 30
30
B
215 219Right-handed 310
Helix 31
31
B
220 226Right-handed alpha
Helix 32
32
B
233 238Right-handed alpha
Helix 33
33
B
239 243Right-handed 310
Helix 34
34
B
251 265Right-handed alpha
Helix 35
35
B
271 285Right-handed alpha
Helix 36
36
B
285 311Right-handed alpha
Helix 37
37
B
330 333Right-handed 310
Helix 38
38
B
335 346Right-handed alpha
Helix 39
39
B
355 358Right-handed 310
Helix 40
40
B
372 388Right-handed alpha
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There are 8 sheets in PDB entry 4DQ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
349 350parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
245 248anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
162 168parallel
Strand 6
A
113 116parallel
Strand 7
A
134 137parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
148 149anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
324 328anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
352 353anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
349 350parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
245 248anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
196 200parallel
Strand 5
B
162 168parallel
Strand 6
B
113 116parallel
Strand 7
B
134 137parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
148 149anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
324 328anti-parallel
Strand 3
B
364 368anti-parallel
Strand 4
B
352 353anti-parallel
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