Analysis of interatomic Contacts of Structural Units in PDB entry:
4DQ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DQ8 entry

There are 2 chains in PDB entry 4DQ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7VAL 386
B
 ASN 7LEU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 4DQ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 65Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
107 109Right-handed 310
Helix 5
5
A
112 127Right-handed alpha
Helix 6
6
A
138 144Right-handed 310
Helix 7
7
A
145 150Right-handed alpha
Helix 8
8
A
154 161Right-handed alpha
Helix 9
9
A
169 185Right-handed alpha
Helix 10
10
A
187 190Right-handed 310
Helix 11
11
A
235 245Right-handed alpha
Helix 12
12
A
249 260Right-handed alpha
Helix 13
13
A
261 268Right-handed alpha
Helix 14
14
A
271 281Right-handed alpha
Helix 15
15
A
283 309Right-handed alpha
Helix 16
16
A
318 324Right-handed alpha
Helix 17
17
A
324 333Right-handed alpha
Helix 18
18
A
335 339Right-handed 310
Helix 19
19
A
343 349Right-handed alpha
Helix 20
20
A
372 384Right-handed alpha
Helix 21
21
B
51 64Right-handed alpha
Helix 22
22
B
95 106Right-handed alpha
Helix 23
23
B
107 109Right-handed 310
Helix 24
24
B
113 126Right-handed alpha
Helix 25
25
B
138 142Right-handed 310
Helix 26
26
B
145 150Right-handed alpha
Helix 27
27
B
154 161Right-handed alpha
Helix 28
28
B
169 185Right-handed alpha
Helix 29
29
B
187 190Right-handed 310
Helix 30
30
B
236 245Right-handed alpha
Helix 31
31
B
249 260Right-handed alpha
Helix 32
32
B
261 268Right-handed alpha
Helix 33
33
B
271 281Right-handed alpha
Helix 34
34
B
283 309Right-handed alpha
Helix 35
35
B
318 324Right-handed alpha
Helix 36
36
B
324 333Right-handed alpha
Helix 37
37
B
335 339Right-handed 310
Helix 38
38
B
343 348Right-handed alpha
Helix 39
39
B
372 384Right-handed alpha
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There are 4 sheets in PDB entry 4DQ8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
9 15anti-parallel
Strand 4
A
74 81parallel
Strand 5
A
132 136parallel
Strand 6
A
92 93anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
192 198anti-parallel
Strand 4
A
313 317parallel
Strand 5
A
365 368parallel
Strand 6
A
355 356anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
9 16anti-parallel
Strand 4
B
74 81parallel
Strand 5
B
132 136parallel
Strand 6
B
92 93anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 215first strand
Strand 2
B
202 208anti-parallel
Strand 3
B
192 198anti-parallel
Strand 4
B
313 317parallel
Strand 5
B
365 368parallel
Strand 6
B
355 356anti-parallel
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