Analysis of interatomic Contacts of Structural Units in PDB entry:
4DRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DRB entry

There are 15 chains in PDB entry 4DRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 12GLU 109
B
 ALA 5ASN 107
C
 LYS 675VAL 790
D
 GLU 9GLN 105
E
 GLU 9GLN 105
F
 LYS 675ASP 789
G
 GLU 4LEU 108
H
 PHE 13ILE 106
I
 LYS 676THR 791
J
 SER 8PHE 81
K
 SER 8PHE 81
L
 SER 8PHE 81
M
 SER 8PHE 81
N
 SER 8PHE 81
O
 SER 8PHE 81
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 4DRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 39Right-handed alpha
Helix 2
2
A
43 72Right-handed alpha
Helix 3
3
A
78 86Right-handed alpha
Helix 4
4
A
89 108Right-handed alpha
Helix 5
5
B
6 39Right-handed alpha
Helix 6
6
B
43 72Right-handed alpha
Helix 7
7
B
78 85Right-handed alpha
Helix 8
8
B
89 107Right-handed alpha
Helix 9
9
C
681 692Right-handed alpha
Helix 10
10
C
736 740Right-handed 310
Helix 11
11
C
752 768Right-handed alpha
Helix 12
12
C
775 783Right-handed alpha
Helix 13
13
C
784 785Right-handed 310
Helix 14
14
C
786 790Right-handed 310
Helix 15
15
D
9 13Right-handed 310
Helix 16
16
D
14 38Right-handed alpha
Helix 17
17
D
43 72Right-handed alpha
Helix 18
18
D
78 86Right-handed alpha
Helix 19
19
D
89 105Right-handed alpha
Helix 20
20
E
10 39Right-handed alpha
Helix 21
21
E
43 72Right-handed alpha
Helix 22
22
E
78 84Right-handed alpha
Helix 23
23
E
85 87Right-handed 310
Helix 24
24
E
89 103Right-handed alpha
Helix 25
25
F
681 692Right-handed alpha
Helix 26
26
F
736 740Right-handed 310
Helix 27
27
F
752 767Right-handed alpha
Helix 28
28
F
776 782Right-handed alpha
Helix 29
29
F
783 785Right-handed 310
Helix 30
30
G
5 38Right-handed alpha
Helix 31
31
G
43 72Right-handed alpha
Helix 32
32
G
78 84Right-handed alpha
Helix 33
33
G
85 87Right-handed 310
Helix 34
34
G
89 107Right-handed alpha
Helix 35
35
H
14 38Right-handed alpha
Helix 36
36
H
43 72Right-handed alpha
Helix 37
37
H
78 86Right-handed alpha
Helix 38
38
H
89 106Right-handed alpha
Helix 39
39
I
681 692Right-handed alpha
Helix 40
40
I
736 740Right-handed 310
Helix 41
41
I
752 767Right-handed alpha
Helix 42
42
I
775 782Right-handed alpha
Helix 43
43
I
783 785Right-handed 310
Helix 44
44
I
786 791Right-handed alpha
Helix 45
45
J
11 21Right-handed alpha
Helix 46
46
J
31 60Right-handed alpha
Helix 47
47
J
66 73Right-handed alpha
Helix 48
48
J
73 81Right-handed alpha
Helix 49
49
K
11 21Right-handed alpha
Helix 50
50
K
31 59Right-handed alpha
Helix 51
51
K
66 72Right-handed alpha
Helix 52
52
K
73 80Right-handed alpha
Helix 53
53
L
11 21Right-handed alpha
Helix 54
54
L
31 60Right-handed alpha
Helix 55
55
L
66 73Right-handed alpha
Helix 56
56
L
73 81Right-handed alpha
Helix 57
57
M
11 21Right-handed alpha
Helix 58
58
M
31 61Right-handed alpha
Helix 59
59
M
66 72Right-handed alpha
Helix 60
60
M
73 81Right-handed alpha
Helix 61
61
N
11 21Right-handed alpha
Helix 62
62
N
31 60Right-handed alpha
Helix 63
63
N
66 81Right-handed alpha
Helix 64
64
O
11 21Right-handed alpha
Helix 65
65
O
31 60Right-handed alpha
Helix 66
66
O
66 73Right-handed alpha
Helix 67
67
O
73 79Right-handed alpha
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There are 13 sheets in PDB entry 4DRB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
J
64 65parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
J
29 30parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
K
29 30parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
702 704first strand
Strand 2
C
728 730parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 42first strand
Strand 2
L
64 65parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 77first strand
Strand 2
L
29 30parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 77first strand
Strand 2
M
29 30parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
702 704first strand
Strand 2
F
728 730parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
41 42first strand
Strand 2
N
64 65parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
76 77first strand
Strand 2
N
29 30parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
41 42first strand
Strand 2
O
64 65parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
76 77first strand
Strand 2
O
29 30parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
702 704first strand
Strand 2
I
728 730parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il