Analysis of interatomic Contacts of Structural Units in PDB entry:
4DRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DRY entry

There are 4 chains in PDB entry 4DRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11GLY 258
B
 ARG 11GLY 258
C
 ARG 11GLY 258
D
 ARG 11GLY 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4DRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
43 59Right-handed alpha
Helix 3
3
A
71 87Right-handed alpha
Helix 4
4
A
104 108Right-handed 310
Helix 5
5
A
109 121Right-handed alpha
Helix 6
6
A
121 138Right-handed alpha
Helix 7
7
A
150 154Right-handed 310
Helix 8
8
A
160 182Right-handed alpha
Helix 9
9
A
222 236Right-handed alpha
Helix 10
10
B
20 33Right-handed alpha
Helix 11
11
B
43 59Right-handed alpha
Helix 12
12
B
71 87Right-handed alpha
Helix 13
13
B
104 108Right-handed 310
Helix 14
14
B
109 121Right-handed alpha
Helix 15
15
B
121 138Right-handed alpha
Helix 16
16
B
150 154Right-handed 310
Helix 17
17
B
160 182Right-handed alpha
Helix 18
18
B
198 204Right-handed alpha
Helix 19
19
B
222 236Right-handed alpha
Helix 20
20
C
20 33Right-handed alpha
Helix 21
21
C
43 59Right-handed alpha
Helix 22
22
C
71 87Right-handed alpha
Helix 23
23
C
104 108Right-handed 310
Helix 24
24
C
109 121Right-handed alpha
Helix 25
25
C
121 138Right-handed alpha
Helix 26
26
C
150 154Right-handed 310
Helix 27
27
C
160 182Right-handed alpha
Helix 28
28
C
198 204Right-handed alpha
Helix 29
29
C
223 236Right-handed alpha
Helix 30
30
D
20 33Right-handed alpha
Helix 31
31
D
43 59Right-handed alpha
Helix 32
32
D
71 87Right-handed alpha
Helix 33
33
D
104 108Right-handed 310
Helix 34
34
D
109 121Right-handed alpha
Helix 35
35
D
121 138Right-handed alpha
Helix 36
36
D
150 154Right-handed 310
Helix 37
37
D
160 181Right-handed alpha
Helix 38
38
D
182 184Right-handed 310
Helix 39
39
D
202 207Right-handed alpha
Helix 40
40
D
222 235Right-handed alpha
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There are 7 sheets in PDB entry 4DRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
36 41parallel
Strand 3
A
12 15parallel
Strand 4
A
91 94parallel
Strand 5
A
143 148parallel
Strand 6
A
186 194parallel
Strand 7
A
240 249parallel
Strand 8
B
240 249anti-parallel
Strand 9
B
186 194parallel
Strand 10
B
143 148parallel
Strand 11
B
91 94parallel
Strand 12
B
12 15parallel
Strand 13
B
36 41parallel
Strand 14
B
62 66parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
215 216anti-parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
36 41parallel
Strand 3
C
12 15parallel
Strand 4
C
91 94parallel
Strand 5
C
143 148parallel
Strand 6
C
186 194parallel
Strand 7
C
240 249parallel
Strand 8
D
240 249anti-parallel
Strand 9
D
186 194parallel
Strand 10
D
143 148parallel
Strand 11
D
91 94parallel
Strand 12
D
12 15parallel
Strand 13
D
36 41parallel
Strand 14
D
62 66parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 197first strand
Strand 2
C
221 222parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
207 209first strand
Strand 2
C
215 217anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 209first strand
Strand 2
D
215 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il