Analysis of interatomic Contacts of Structural Units in PDB entry:
4DS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DS8 entry

There are 2 chains in PDB entry 4DS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 23SER 207
B
 ASP 185LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4DS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 33Right-handed alpha
Helix 2
2
A
33 41Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
74 78Right-handed 310
Helix 5
5
A
181 205Right-handed alpha
Helix 6
6
B
218 220Right-handed 310
Helix 7
7
B
248 269Right-handed alpha
Helix 8
8
B
282 302Right-handed alpha
Helix 9
9
B
368 379Right-handed alpha
Helix 10
10
B
403 406Right-handed 310
Helix 11
11
B
431 436Right-handed alpha
Helix 12
12
B
439 458Right-handed alpha
Helix 13
13
B
471 488Right-handed alpha
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There are 5 sheets in PDB entry 4DS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
163 175anti-parallel
Strand 3
A
145 155anti-parallel
Strand 4
A
129 136anti-parallel
Strand 5
A
115 124anti-parallel
Strand 6
A
102 107anti-parallel
Strand 7
A
82 87anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
348 353anti-parallel
Strand 5
B
356 359anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 216first strand
Strand 2
B
233 245anti-parallel
Strand 3
B
326 327anti-parallel
Strand 4
B
400 401anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 216first strand
Strand 2
B
233 245anti-parallel
Strand 3
B
329 334anti-parallel
Strand 4
B
338 344anti-parallel
Strand 5
B
414 419anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
388 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il