Analysis of interatomic Contacts of Structural Units in PDB entry:
4DSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DSB entry

There are 2 chains in PDB entry 4DSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24SER 207
B
 THR 26ALA 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4DSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 41Right-handed alpha
Helix 2
2
A
61 70Right-handed alpha
Helix 3
3
A
74 78Right-handed 310
Helix 4
4
A
181 206Right-handed alpha
Helix 5
5
B
27 42Right-handed alpha
Helix 6
6
B
61 71Right-handed alpha
Helix 7
7
B
74 78Right-handed 310
Helix 8
8
B
181 206Right-handed alpha
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There are 2 sheets in PDB entry 4DSB. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
163 175anti-parallel
Strand 3
A
142 155anti-parallel
Strand 4
A
129 136anti-parallel
Strand 5
A
115 124anti-parallel
Strand 6
A
102 107anti-parallel
Strand 7
A
82 87anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 58first strand
Strand 2
B
165 175anti-parallel
Strand 3
B
145 153anti-parallel
Strand 4
B
129 136anti-parallel
Strand 5
B
115 124anti-parallel
Strand 6
B
102 107anti-parallel
Strand 7
B
82 87anti-parallel
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