Analysis of interatomic Contacts of Structural Units in PDB entry:
4DSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DSJ entry

There are 6 chains in PDB entry 4DSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 298LYS 876
B
 LYS 298LYS 876
C
 A 1 G 12
D
 C 21 G 30
E
 A 1 G 12
F
 C 21 G 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 4DSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
308 312Right-handed 310
Helix 2
2
A
347 354Right-handed alpha
Helix 3
3
A
354 363Right-handed alpha
Helix 4
4
A
372 383Right-handed alpha
Helix 5
5
A
394 402Right-handed alpha
Helix 6
6
A
403 406Right-handed 310
Helix 7
7
A
409 417Right-handed alpha
Helix 8
8
A
424 429Right-handed alpha
Helix 9
9
A
439 469Right-handed alpha
Helix 10
10
A
470 475Right-handed alpha
Helix 11
11
A
477 492Right-handed alpha
Helix 12
12
A
496 523Right-handed alpha
Helix 13
13
A
530 540Right-handed alpha
Helix 14
14
A
557 565Right-handed alpha
Helix 15
15
A
566 568Right-handed 310
Helix 16
16
A
569 588Right-handed alpha
Helix 17
17
A
588 593Right-handed alpha
Helix 18
18
A
622 626Right-handed 310
Helix 19
19
A
630 635Right-handed alpha
Helix 20
20
A
636 638Right-handed 310
Helix 21
21
A
656 667Right-handed alpha
Helix 22
22
A
668 677Right-handed alpha
Helix 23
23
A
680 691Right-handed alpha
Helix 24
24
A
699 712Right-handed alpha
Helix 25
25
A
713 715Right-handed 310
Helix 26
26
A
717 726Right-handed alpha
Helix 27
27
A
728 743Right-handed alpha
Helix 28
28
A
743 761Right-handed alpha
Helix 29
29
A
774 778Right-handed 310
Helix 30
30
A
780 818Right-handed alpha
Helix 31
31
A
840 854Right-handed alpha
Helix 32
32
A
871 875Right-handed 310
Helix 33
33
B
347 352Right-handed alpha
Helix 34
34
B
354 363Right-handed alpha
Helix 35
35
B
373 384Right-handed alpha
Helix 36
36
B
394 402Right-handed alpha
Helix 37
37
B
403 406Right-handed 310
Helix 38
38
B
409 416Right-handed alpha
Helix 39
39
B
425 430Right-handed alpha
Helix 40
40
B
439 458Right-handed alpha
Helix 41
41
B
459 468Right-handed alpha
Helix 42
42
B
470 476Right-handed alpha
Helix 43
43
B
477 492Right-handed alpha
Helix 44
44
B
496 522Right-handed alpha
Helix 45
45
B
530 535Right-handed alpha
Helix 46
46
B
557 562Right-handed alpha
Helix 47
47
B
569 587Right-handed alpha
Helix 48
48
B
588 594Right-handed alpha
Helix 49
49
B
633 638Right-handed 310
Helix 50
50
B
656 667Right-handed alpha
Helix 51
51
B
668 677Right-handed alpha
Helix 52
52
B
680 685Right-handed alpha
Helix 53
53
B
685 690Right-handed alpha
Helix 54
54
B
698 714Right-handed alpha
Helix 55
55
B
717 725Right-handed alpha
Helix 56
56
B
728 741Right-handed alpha
Helix 57
57
B
743 748Right-handed alpha
Helix 58
58
B
748 761Right-handed alpha
Helix 59
59
B
780 813Right-handed alpha
Helix 60
60
B
839 855Right-handed alpha
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There are 10 sheets in PDB entry 4DSJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
342 346parallel
Strand 3
A
335 339anti-parallel
Strand 4
A
315 320anti-parallel
Strand 5
A
367 370parallel
Strand 6
A
390 393parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
640 641anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 607first strand
Strand 2
A
617 619anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 827first strand
Strand 2
A
831 837anti-parallel
Strand 3
A
647 655anti-parallel
Strand 4
A
863 869anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 764first strand
Strand 2
A
770 772anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
342 346parallel
Strand 3
B
332 339anti-parallel
Strand 4
B
315 322anti-parallel
Strand 5
B
367 370parallel
Strand 6
B
390 393parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
601 602first strand
Strand 2
B
493 495anti-parallel
Strand 3
B
640 641anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
605 607first strand
Strand 2
B
617 619anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
823 827first strand
Strand 2
B
831 837anti-parallel
Strand 3
B
647 654anti-parallel
Strand 4
B
864 869anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
762 764first strand
Strand 2
B
770 772anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il