Analysis of interatomic Contacts of Structural Units in PDB entry:
4DU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DU8 entry

There are 2 chains in PDB entry 4DU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -2LYS 327
B
 MET 1ILE 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4DU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 85Right-handed alpha
Helix 2
2
A
106 122Right-handed alpha
Helix 3
3
A
127 139Right-handed alpha
Helix 4
4
A
140 147Right-handed 310
Helix 5
5
A
171 174Right-handed 310
Helix 6
6
A
191 203Right-handed alpha
Helix 7
7
A
205 226Right-handed alpha
Helix 8
8
A
228 249Right-handed alpha
Helix 9
9
A
258 274Right-handed alpha
Helix 10
10
A
296 306Right-handed alpha
Helix 11
11
A
309 311Right-handed 310
Helix 12
12
B
66 85Right-handed alpha
Helix 13
13
B
106 122Right-handed alpha
Helix 14
14
B
127 137Right-handed alpha
Helix 15
15
B
141 146Right-handed alpha
Helix 16
16
B
171 174Right-handed 310
Helix 17
17
B
193 203Right-handed alpha
Helix 18
18
B
205 226Right-handed alpha
Helix 19
19
B
228 249Right-handed alpha
Helix 20
20
B
258 274Right-handed alpha
Helix 21
21
B
294 306Right-handed alpha
Helix 22
22
B
309 311Right-handed 310
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There are 8 sheets in PDB entry 4DU8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
89 97parallel
Strand 4
A
33 50anti-parallel
Strand 5
A
150 154anti-parallel
Strand 6
A
163 167anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
89 97parallel
Strand 4
A
33 50anti-parallel
Strand 5
A
3 16anti-parallel
Strand 6
A
324 325anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
28 29anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
176 181anti-parallel
Strand 4
A
313 317anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
90 97parallel
Strand 4
B
33 49anti-parallel
Strand 5
B
150 154anti-parallel
Strand 6
B
163 167anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
57 60anti-parallel
Strand 3
B
90 97parallel
Strand 4
B
33 49anti-parallel
Strand 5
B
3 16anti-parallel
Strand 6
B
324 325anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
28 29anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
288 293anti-parallel
Strand 3
B
176 181anti-parallel
Strand 4
B
313 317anti-parallel
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