Analysis of interatomic Contacts of Structural Units in PDB entry:
4DV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DV8 entry

There is 1 chain in PDB entry 4DV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 265SER 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4DV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
266 278Right-handed alpha
Helix 2
2
A
278 285Right-handed alpha
Helix 3
3
A
286 298Right-handed alpha
Helix 4
4
A
303 310Right-handed alpha
Helix 5
5
A
312 322Right-handed alpha
Helix 6
6
A
323 327Right-handed 310
Helix 7
7
A
331 347Right-handed alpha
Helix 8
8
A
350 357Right-handed alpha
Helix 9
9
A
369 380Right-handed alpha
Helix 10
10
A
381 383Right-handed 310
Helix 11
11
A
387 396Right-handed alpha
Helix 12
12
A
405 423Right-handed alpha
Helix 13
13
A
427 432Right-handed alpha
Helix 14
14
A
442 446Right-handed 310
Helix 15
15
A
447 452Right-handed alpha
Helix 16
16
A
464 473Right-handed alpha
Helix 17
17
A
551 575Right-handed alpha
Helix 18
18
A
591 610Right-handed alpha
Helix 19
19
A
611 625Right-handed alpha
Helix 20
20
A
635 638Right-handed 310
Helix 21
21
A
639 644Right-handed alpha
Helix 22
22
A
648 652Right-handed 310
Helix 23
23
A
661 664Right-handed 310
Helix 24
24
A
679 701Right-handed alpha
Helix 25
25
A
707 710Right-handed 310
Helix 26
26
A
711 722Right-handed alpha
Helix 27
27
A
727 731Right-handed 310
Helix 28
28
A
732 745Right-handed alpha
Helix 29
29
A
748 759Right-handed alpha
Helix 30
30
A
759 775Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4DV8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
499 504anti-parallel
Strand 3
A
540 550parallel
Strand 4
A
525 537anti-parallel
Strand 5
A
477 480anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
511 514anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
629 632parallel
Strand 3
A
665 669parallel
Strand 4
A
657 660anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il