Analysis of interatomic Contacts of Structural Units in PDB entry:
4DVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DVG entry

There are 2 chains in PDB entry 4DVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 21PHE 184
B
 GLU 73LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4DVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 41Right-handed alpha
Helix 2
2
A
78 82Right-handed 310
Helix 3
3
A
84 89Right-handed 310
Helix 4
4
A
103 113Right-handed alpha
Helix 5
5
A
113 122Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
145 157Right-handed alpha
Helix 8
8
A
171 182Right-handed alpha
Helix 9
9
B
76 78Right-handed 310
Helix 10
10
B
79 86Right-handed alpha
Helix 11
11
B
90 94Right-handed 310
Helix 12
12
B
95 124Right-handed alpha
Helix 13
13
B
125 130Right-handed alpha
Helix 14
14
B
132 140Right-handed alpha
Helix 15
15
B
145 159Right-handed alpha
Helix 16
16
B
160 170Right-handed alpha
Helix 17
17
B
172 186Right-handed alpha
Helix 18
18
B
189 207Right-handed alpha
Helix 19
19
B
209 218Right-handed alpha
Helix 20
20
B
221 231Right-handed alpha
Helix 21
21
B
236 253Right-handed alpha
Helix 22
22
B
265 280Right-handed alpha
Helix 23
23
B
287 297Right-handed alpha
Helix 24
24
B
299 315Right-handed alpha
Helix 25
25
B
318 331Right-handed alpha
Helix 26
26
B
333 343Right-handed alpha
Helix 27
27
B
344 348Right-handed 310
Helix 28
28
B
349 375Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DVG.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 63first strand
Strand 2
A
66 75anti-parallel
Strand 3
A
22 27parallel
Strand 4
A
94 100parallel
Strand 5
A
126 132parallel
Strand 6
A
160 163parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il