Analysis of interatomic Contacts of Structural Units in PDB entry:
4DVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DVJ entry

There are 2 chains in PDB entry 4DVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 19LEU 361
B
 TYR 19LEU 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4DVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 75Right-handed alpha
Helix 2
2
A
130 132Right-handed 310
Helix 3
3
A
140 146Right-handed alpha
Helix 4
4
A
147 160Right-handed alpha
Helix 5
5
A
182 196Right-handed alpha
Helix 6
6
A
206 216Right-handed alpha
Helix 7
7
A
227 234Right-handed alpha
Helix 8
8
A
248 260Right-handed alpha
Helix 9
9
A
276 281Right-handed 310
Helix 10
10
A
293 299Right-handed alpha
Helix 11
11
A
303 319Right-handed alpha
Helix 12
12
A
334 347Right-handed alpha
Helix 13
13
B
65 73Right-handed alpha
Helix 14
14
B
140 146Right-handed alpha
Helix 15
15
B
147 160Right-handed alpha
Helix 16
16
B
182 196Right-handed alpha
Helix 17
17
B
206 216Right-handed alpha
Helix 18
18
B
227 235Right-handed alpha
Helix 19
19
B
248 260Right-handed alpha
Helix 20
20
B
276 281Right-handed 310
Helix 21
21
B
293 299Right-handed alpha
Helix 22
22
B
304 319Right-handed alpha
Helix 23
23
B
334 348Right-handed alpha
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There are 7 sheets in PDB entry 4DVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
41 46anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
54 63anti-parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
108 111anti-parallel
Strand 5
A
133 134anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 128first strand
Strand 2
A
54 63anti-parallel
Strand 3
A
353 357anti-parallel
Strand 4
A
326 330parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
199 203parallel
Strand 3
A
172 178parallel
Strand 4
A
240 245parallel
Strand 5
A
265 268parallel
Strand 6
A
286 289parallel
Strand 7
B
286 289anti-parallel
Strand 8
B
265 268parallel
Strand 9
B
240 245parallel
Strand 10
B
172 178parallel
Strand 11
B
199 203parallel
Strand 12
B
220 222parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
41 46anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
54 63anti-parallel
Strand 3
B
89 96anti-parallel
Strand 4
B
108 111anti-parallel
Strand 5
B
132 134anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 128first strand
Strand 2
B
54 63anti-parallel
Strand 3
B
353 357anti-parallel
Strand 4
B
326 330parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il