Analysis of interatomic Contacts of Structural Units in PDB entry:
4DVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DVY entry

There is 1 chain in PDB entry 4DVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 GLN 24ALA 824
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4DVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
24 45Right-handed alpha
Helix 2
2
P
48 80Right-handed alpha
Helix 3
3
P
83 102Right-handed alpha
Helix 4
4
P
106 113Right-handed alpha
Helix 5
5
P
121 132Right-handed alpha
Helix 6
6
P
134 138Right-handed 310
Helix 7
7
P
139 147Right-handed alpha
Helix 8
8
P
157 184Right-handed alpha
Helix 9
9
P
184 191Right-handed alpha
Helix 10
10
P
191 204Right-handed alpha
Helix 11
11
P
211 219Right-handed alpha
Helix 12
12
P
375 379Right-handed 310
Helix 13
13
P
394 411Right-handed alpha
Helix 14
14
P
419 426Right-handed alpha
Helix 15
15
P
426 436Right-handed alpha
Helix 16
16
P
437 447Right-handed alpha
Helix 17
17
P
555 568Right-handed alpha
Helix 18
18
P
571 607Right-handed alpha
Helix 19
19
P
609 640Right-handed alpha
Helix 20
20
P
648 709Right-handed alpha
Helix 21
21
P
722 734Right-handed alpha
Helix 22
22
P
737 754Right-handed alpha
Helix 23
23
P
763 803Right-handed alpha
Helix 24
24
P
805 822Right-handed alpha
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There are 2 sheets in PDB entry 4DVY. Click on sheet of interest to get list of strands forming it: A, B,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
309 313first strand
Strand 2
P
320 325anti-parallel
Strand 3
P
336 342anti-parallel
Strand 4
P
351 358anti-parallel
Strand 5
P
363 367anti-parallel
Strand 6
P
448 452anti-parallel
Strand 7
P
460 467anti-parallel
Strand 8
P
471 477anti-parallel
Strand 9
P
493 495anti-parallel
Strand 10
P
503 507anti-parallel
Strand 11
P
539 543anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
381 383first strand
Strand 2
P
390 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il