Analysis of interatomic Contacts of Structural Units in PDB entry:
4DVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DVZ entry

There is 1 chain in PDB entry 4DVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 308LYS 829
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4DVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
375 379Right-handed 310
Helix 2
2
A
394 411Right-handed alpha
Helix 3
3
A
419 426Right-handed alpha
Helix 4
4
A
426 436Right-handed alpha
Helix 5
5
A
436 447Right-handed alpha
Helix 6
6
A
497 502Right-handed alpha
Helix 7
7
A
555 568Right-handed alpha
Helix 8
8
A
571 607Right-handed alpha
Helix 9
9
A
609 639Right-handed alpha
Helix 10
10
A
651 711Right-handed alpha
Helix 11
11
A
719 735Right-handed alpha
Helix 12
12
A
737 756Right-handed alpha
Helix 13
13
A
762 803Right-handed alpha
Helix 14
14
A
805 827Right-handed alpha
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There are 2 sheets in PDB entry 4DVZ. Click on sheet of interest to get list of strands forming it: A, B,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
336 343anti-parallel
Strand 4
A
350 358anti-parallel
Strand 5
A
363 367anti-parallel
Strand 6
A
448 452anti-parallel
Strand 7
A
460 466anti-parallel
Strand 8
A
471 477anti-parallel
Strand 9
A
492 496anti-parallel
Strand 10
A
503 508anti-parallel
Strand 11
A
538 543anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
390 392anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il