Analysis of interatomic Contacts of Structural Units in PDB entry:
4DWE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DWE entry

There is 1 chain in PDB entry 4DWE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40GLU 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4DWE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
88 92Right-handed 310
Helix 3
3
A
104 110Right-handed alpha
Helix 4
4
A
110 116Right-handed alpha
Helix 5
5
A
127 134Right-handed alpha
Helix 6
6
A
169 174Right-handed 310
Helix 7
7
A
186 190Right-handed 310
Helix 8
8
A
196 205Right-handed alpha
Helix 9
9
A
218 222Right-handed 310
Helix 10
10
A
223 242Right-handed alpha
Helix 11
11
A
256 264Right-handed alpha
Helix 12
12
A
309 323Right-handed alpha
Helix 13
13
A
324 329Right-handed 310
Helix 14
14
A
340 354Right-handed alpha
Helix 15
15
A
366 380Right-handed alpha
Helix 16
16
A
419 421Right-handed 310
Helix 17
17
A
453 468Right-handed alpha
Helix 18
18
A
471 483Right-handed alpha
Helix 19
19
A
488 498Right-handed alpha
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There are 7 sheets in PDB entry 4DWE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
176 178anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 388first strand
Strand 2
A
391 399anti-parallel
Strand 3
A
63 72anti-parallel
Strand 4
A
423 428anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
410 416anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
434 440anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
162 164parallel
Strand 3
A
94 100parallel
Strand 4
A
332 336parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
162 164parallel
Strand 3
A
94 100parallel
Strand 4
A
362 365parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
156 158anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
271 274parallel
Strand 3
A
293 296parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il