Analysis of interatomic Contacts of Structural Units in PDB entry:
4DWH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DWH entry

There are 4 chains in PDB entry 4DWH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1MET 204
B
 MET 17GLN 159
C
 GLY 1GLU 205
D
 MET 17GLN 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4DWH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
123 131Right-handed 310
Helix 2
2
B
62 68Right-handed alpha
Helix 3
3
C
123 131Right-handed 310
Helix 4
4
D
62 68Right-handed alpha
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There are 14 sheets in PDB entry 4DWH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
61 69anti-parallel
Strand 4
A
48 51anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
102 116parallel
Strand 3
B
31 33anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
81 91anti-parallel
Strand 4
A
102 116anti-parallel
Strand 5
B
150 157parallel
Strand 6
B
70 74anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
139 143anti-parallel
Strand 3
A
172 176anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
165 167anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
150 157anti-parallel
Strand 3
A
184 189anti-parallel
Strand 4
A
200 203anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
130 144anti-parallel
Strand 4
B
45 48anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
130 144anti-parallel
Strand 4
B
97 104anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
62 69anti-parallel
Strand 4
C
48 51anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
102 116parallel
Strand 3
D
31 33anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
30 38anti-parallel
Strand 3
C
81 91anti-parallel
Strand 4
C
102 116anti-parallel
Strand 5
D
150 158parallel
Strand 6
D
69 74anti-parallel
Strand 7
D
118 119anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
150 157anti-parallel
Strand 3
C
165 167anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
150 157anti-parallel
Strand 3
C
184 189anti-parallel
Strand 4
C
200 205anti-parallel
Strand 5
C
132 136parallel
Strand 6
C
139 144anti-parallel
Strand 7
C
171 176anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 25first strand
Strand 2
D
52 59anti-parallel
Strand 3
D
130 139anti-parallel
Strand 4
D
99 104anti-parallel
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