Analysis of interatomic Contacts of Structural Units in PDB entry:
4DWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DWK entry

There are 2 chains in PDB entry 4DWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 42	HIS 1011
B	ASN 44	HIS 1011

There are 89 helices in PDB entry 4DWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	95	99	Right-handed 310
Helix 2	2	A	105	115	Right-handed alpha
Helix 3	3	A	125	133	Right-handed alpha
Helix 4	4	A	157	168	Right-handed alpha
Helix 5	5	A	175	195	Right-handed alpha
Helix 6	6	A	196	209	Right-handed alpha
Helix 7	7	A	213	217	Right-handed 310
Helix 8	8	A	222	227	Right-handed alpha
Helix 9	9	A	227	233	Right-handed alpha
Helix 10	10	A	236	249	Right-handed alpha
Helix 11	11	A	250	252	Right-handed 310
Helix 12	12	A	263	276	Right-handed alpha
Helix 13	13	A	294	298	Right-handed 310
Helix 14	14	A	322	326	Right-handed 310
Helix 15	15	A	329	339	Right-handed alpha
Helix 16	16	A	345	353	Right-handed alpha
Helix 17	17	A	380	386	Right-handed alpha
Helix 18	18	A	386	405	Right-handed alpha
Helix 19	19	A	407	424	Right-handed alpha
Helix 20	20	A	429	441	Right-handed alpha
Helix 21	21	A	445	449	Right-handed 310
Helix 22	22	A	460	469	Right-handed alpha
Helix 23	23	A	470	471	Right-handed 310
Helix 24	24	A	472	475	Right-handed 310
Helix 25	25	A	484	486	Right-handed 310
Helix 26	26	A	506	515	Right-handed alpha
Helix 27	27	A	580	584	Right-handed 310
Helix 28	28	A	586	614	Right-handed alpha
Helix 29	29	A	637	650	Right-handed alpha
Helix 30	30	A	655	673	Right-handed alpha
Helix 31	31	A	674	676	Right-handed 310
Helix 32	32	A	677	691	Right-handed alpha
Helix 33	33	A	696	705	Right-handed alpha
Helix 34	34	A	708	720	Right-handed alpha
Helix 35	35	A	734	754	Right-handed alpha
Helix 36	36	A	759	763	Right-handed 310
Helix 37	37	A	801	824	Right-handed alpha
Helix 38	38	A	855	877	Right-handed alpha
Helix 39	39	A	878	895	Right-handed alpha
Helix 40	40	A	899	913	Right-handed alpha
Helix 41	41	A	919	930	Right-handed alpha
Helix 42	42	A	932	944	Right-handed alpha
Helix 43	43	A	994	1001	Right-handed alpha
Helix 44	44	B	95	99	Right-handed 310
Helix 45	45	B	105	114	Right-handed alpha
Helix 46	46	B	125	134	Right-handed alpha
Helix 47	47	B	157	167	Right-handed alpha
Helix 48	48	B	168	170	Right-handed 310
Helix 49	49	B	175	195	Right-handed alpha
Helix 50	50	B	196	207	Right-handed alpha
Helix 51	51	B	213	217	Right-handed 310
Helix 52	52	B	222	227	Right-handed alpha
Helix 53	53	B	227	234	Right-handed alpha
Helix 54	54	B	236	249	Right-handed alpha
Helix 55	55	B	250	252	Right-handed 310
Helix 56	56	B	263	276	Right-handed alpha
Helix 57	57	B	294	298	Right-handed 310
Helix 58	58	B	322	326	Right-handed 310
Helix 59	59	B	329	339	Right-handed alpha
Helix 60	60	B	345	353	Right-handed alpha
Helix 61	61	B	380	386	Right-handed alpha
Helix 62	62	B	386	405	Right-handed alpha
Helix 63	63	B	407	424	Right-handed alpha
Helix 64	64	B	429	441	Right-handed alpha
Helix 65	65	B	445	447	Right-handed 310
Helix 66	66	B	448	453	Right-handed alpha
Helix 67	67	B	460	469	Right-handed alpha
Helix 68	68	B	470	471	Right-handed 310
Helix 69	69	B	472	475	Right-handed 310
Helix 70	70	B	483	486	Right-handed 310
Helix 71	71	B	506	515	Right-handed alpha
Helix 72	72	B	581	584	Right-handed 310
Helix 73	73	B	586	604	Right-handed alpha
Helix 74	74	B	604	614	Right-handed alpha
Helix 75	75	B	637	650	Right-handed alpha
Helix 76	76	B	655	672	Right-handed alpha
Helix 77	77	B	673	676	Right-handed 310
Helix 78	78	B	677	691	Right-handed alpha
Helix 79	79	B	696	704	Right-handed alpha
Helix 80	80	B	708	721	Right-handed alpha
Helix 81	81	B	734	754	Right-handed alpha
Helix 82	82	B	759	763	Right-handed 310
Helix 83	83	B	801	824	Right-handed alpha
Helix 84	84	B	855	877	Right-handed alpha
Helix 85	85	B	878	895	Right-handed alpha
Helix 86	86	B	899	913	Right-handed alpha
Helix 87	87	B	919	931	Right-handed alpha
Helix 88	88	B	932	944	Right-handed alpha
Helix 89	89	B	994	1001	Right-handed alpha

There are 10 sheets in PDB entry 4DWK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	63	69	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	254	260	parallel
Strand 5	A	85	92	anti-parallel
Strand 6	A	147	154	anti-parallel
Strand 7	A	137	142	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	367	first strand
Strand 2	A	370	378	anti-parallel
Strand 3	A	311	319	anti-parallel
Strand 4	A	477	482	anti-parallel
Strand 5	A	300	304	parallel
Strand 6	A	499	504	anti-parallel
Strand 7	A	491	492	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	563	anti-parallel
Strand 3	A	722	731	parallel
Strand 4	A	571	579	anti-parallel
Strand 5	A	626	634	anti-parallel
Strand 6	A	616	623	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	553	first strand
Strand 2	A	557	563	anti-parallel
Strand 3	A	722	731	parallel
Strand 4	A	756	757	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	832	840	first strand
Strand 2	A	843	852	anti-parallel
Strand 3	A	789	799	anti-parallel
Strand 4	A	953	959	anti-parallel
Strand 5	A	776	782	parallel
Strand 6	A	990	991	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	63	69	anti-parallel
Strand 3	B	74	79	anti-parallel
Strand 4	B	254	260	parallel
Strand 5	B	85	92	anti-parallel
Strand 6	B	147	154	anti-parallel
Strand 7	B	137	142	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	367	first strand
Strand 2	B	370	378	anti-parallel
Strand 3	B	312	320	anti-parallel
Strand 4	B	477	481	anti-parallel
Strand 5	B	300	304	parallel
Strand 6	B	499	504	anti-parallel
Strand 7	B	491	492	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	553	first strand
Strand 2	B	557	563	anti-parallel
Strand 3	B	722	731	parallel
Strand 4	B	571	579	anti-parallel
Strand 5	B	626	634	anti-parallel
Strand 6	B	616	622	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	553	first strand
Strand 2	B	557	563	anti-parallel
Strand 3	B	722	731	parallel
Strand 4	B	756	757	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	840	first strand
Strand 2	B	843	852	anti-parallel
Strand 3	B	789	799	anti-parallel
Strand 4	B	952	959	anti-parallel
Strand 5	B	775	782	parallel
Strand 6	B	990	991	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DWK