Analysis of interatomic Contacts of Structural Units in PDB entry:
4DWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DWR entry

There are 3 chains in PDB entry 4DWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 2HIS 487
A
 VAL 2ALA 484
C
 VAL 2GLU 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 4DWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
31 40Right-handed alpha
Helix 2
2
B
42 51Right-handed alpha
Helix 3
3
B
88 92Right-handed 310
Helix 4
4
B
108 113Right-handed alpha
Helix 5
5
B
115 127Right-handed alpha
Helix 6
6
B
140 143Right-handed 310
Helix 7
7
B
144 151Right-handed alpha
Helix 8
8
B
151 158Right-handed alpha
Helix 9
9
B
162 174Right-handed 310
Helix 10
10
B
179 183Right-handed 310
Helix 11
11
B
184 192Right-handed alpha
Helix 12
12
B
193 195Right-handed 310
Helix 13
13
B
215 222Right-handed alpha
Helix 14
14
B
237 256Right-handed alpha
Helix 15
15
B
257 259Right-handed 310
Helix 16
16
B
275 312Right-handed alpha
Helix 17
17
B
365 369Right-handed 310
Helix 18
18
B
391 398Right-handed alpha
Helix 19
19
B
411 417Right-handed alpha
Helix 20
20
B
420 431Right-handed alpha
Helix 21
21
B
440 446Right-handed alpha
Helix 22
22
B
447 451Right-handed 310
Helix 23
23
B
453 464Right-handed alpha
Helix 24
24
A
31 41Right-handed alpha
Helix 25
25
A
42 51Right-handed alpha
Helix 26
26
A
88 92Right-handed 310
Helix 27
27
A
109 113Right-handed alpha
Helix 28
28
A
115 127Right-handed alpha
Helix 29
29
A
140 143Right-handed 310
Helix 30
30
A
144 151Right-handed alpha
Helix 31
31
A
151 158Right-handed alpha
Helix 32
32
A
162 174Right-handed 310
Helix 33
33
A
179 183Right-handed 310
Helix 34
34
A
184 192Right-handed alpha
Helix 35
35
A
193 195Right-handed 310
Helix 36
36
A
215 222Right-handed alpha
Helix 37
37
A
239 260Right-handed alpha
Helix 38
38
A
275 312Right-handed alpha
Helix 39
39
A
365 370Right-handed alpha
Helix 40
40
A
391 398Right-handed alpha
Helix 41
41
A
411 419Right-handed alpha
Helix 42
42
A
420 431Right-handed alpha
Helix 43
43
A
439 446Right-handed alpha
Helix 44
44
A
447 451Right-handed 310
Helix 45
45
A
453 465Right-handed alpha
Helix 46
46
C
31 39Right-handed alpha
Helix 47
47
C
42 51Right-handed alpha
Helix 48
48
C
88 92Right-handed 310
Helix 49
49
C
108 113Right-handed alpha
Helix 50
50
C
115 127Right-handed alpha
Helix 51
51
C
140 143Right-handed 310
Helix 52
52
C
144 151Right-handed alpha
Helix 53
53
C
151 158Right-handed alpha
Helix 54
54
C
162 174Right-handed 310
Helix 55
55
C
179 183Right-handed 310
Helix 56
56
C
184 192Right-handed alpha
Helix 57
57
C
193 195Right-handed 310
Helix 58
58
C
215 222Right-handed alpha
Helix 59
59
C
239 256Right-handed alpha
Helix 60
60
C
257 259Right-handed 310
Helix 61
61
C
275 312Right-handed alpha
Helix 62
62
C
365 370Right-handed alpha
Helix 63
63
C
391 398Right-handed alpha
Helix 64
64
C
411 419Right-handed alpha
Helix 65
65
C
420 431Right-handed alpha
Helix 66
66
C
439 446Right-handed alpha
Helix 67
67
C
447 451Right-handed 310
Helix 68
68
C
453 465Right-handed alpha
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There are 15 sheets in PDB entry 4DWR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
12 15anti-parallel
Strand 3
B
26 29anti-parallel
Strand 4
B
60 67parallel
Strand 5
B
74 81anti-parallel
Strand 6
B
342 351anti-parallel
Strand 7
B
330 339anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
271 272anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 328first strand
Strand 2
B
99 103anti-parallel
Strand 3
B
229 235anti-parallel
Strand 4
B
204 213anti-parallel
Strand 5
B
468 479anti-parallel
Strand 6
B
385 389anti-parallel
Strand 7
B
374 377anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 328first strand
Strand 2
B
99 103anti-parallel
Strand 3
B
229 235anti-parallel
Strand 4
B
204 213anti-parallel
Strand 5
B
468 479anti-parallel
Strand 6
B
434 436parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 355first strand
Strand 2
B
401 403anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
12 15anti-parallel
Strand 3
A
26 29anti-parallel
Strand 4
A
60 67parallel
Strand 5
A
74 81anti-parallel
Strand 6
A
342 351anti-parallel
Strand 7
A
330 339anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
271 272anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 328first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
204 213anti-parallel
Strand 5
A
468 479anti-parallel
Strand 6
A
385 389anti-parallel
Strand 7
A
374 377anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 328first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
228 235anti-parallel
Strand 4
A
204 213anti-parallel
Strand 5
A
468 479anti-parallel
Strand 6
A
434 436parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
401 403anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
12 15anti-parallel
Strand 3
C
26 29anti-parallel
Strand 4
C
60 67parallel
Strand 5
C
74 81anti-parallel
Strand 6
C
342 351anti-parallel
Strand 7
C
330 339anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
C
271 272anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 328first strand
Strand 2
C
99 103anti-parallel
Strand 3
C
229 235anti-parallel
Strand 4
C
204 213anti-parallel
Strand 5
C
468 479anti-parallel
Strand 6
C
385 389anti-parallel
Strand 7
C
374 377anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
323 328first strand
Strand 2
C
99 103anti-parallel
Strand 3
C
229 235anti-parallel
Strand 4
C
204 213anti-parallel
Strand 5
C
468 479anti-parallel
Strand 6
C
434 436parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 355first strand
Strand 2
C
401 403anti-parallel
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