Analysis of interatomic Contacts of Structural Units in PDB entry:
4DWZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DWZ entry

There are 6 chains in PDB entry 4DWZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12LEU 269
B
 LEU 5LEU 269
C
 MET 1LEU 269
D
 MET 1LEU 269
E
 GLY 14LEU 269
F
 MET 1LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 4DWZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 26Right-handed alpha
Helix 2
2
A
28 39Right-handed alpha
Helix 3
3
A
62 76Right-handed alpha
Helix 4
4
A
85 93Right-handed alpha
Helix 5
5
A
94 96Right-handed 310
Helix 6
6
A
104 108Right-handed 310
Helix 7
7
A
139 148Right-handed alpha
Helix 8
8
A
163 166Right-handed 310
Helix 9
9
A
167 175Right-handed alpha
Helix 10
10
A
177 182Right-handed alpha
Helix 11
11
A
195 212Right-handed alpha
Helix 12
12
A
220 231Right-handed alpha
Helix 13
13
A
250 269Right-handed alpha
Helix 14
14
B
12 25Right-handed alpha
Helix 15
15
B
28 40Right-handed alpha
Helix 16
16
B
62 76Right-handed alpha
Helix 17
17
B
85 93Right-handed alpha
Helix 18
18
B
94 96Right-handed 310
Helix 19
19
B
104 108Right-handed 310
Helix 20
20
B
139 148Right-handed alpha
Helix 21
21
B
163 166Right-handed 310
Helix 22
22
B
167 175Right-handed alpha
Helix 23
23
B
177 182Right-handed alpha
Helix 24
24
B
195 212Right-handed alpha
Helix 25
25
B
220 231Right-handed alpha
Helix 26
26
B
250 269Right-handed alpha
Helix 27
27
C
2 6Right-handed alpha
Helix 28
28
C
12 26Right-handed alpha
Helix 29
29
C
28 39Right-handed alpha
Helix 30
30
C
62 74Right-handed alpha
Helix 31
31
C
85 93Right-handed alpha
Helix 32
32
C
94 96Right-handed 310
Helix 33
33
C
139 149Right-handed alpha
Helix 34
34
C
163 166Right-handed 310
Helix 35
35
C
167 175Right-handed alpha
Helix 36
36
C
177 182Right-handed alpha
Helix 37
37
C
195 210Right-handed alpha
Helix 38
38
C
220 231Right-handed alpha
Helix 39
39
C
250 266Right-handed alpha
Helix 40
40
D
4 8Right-handed 310
Helix 41
41
D
12 26Right-handed alpha
Helix 42
42
D
28 40Right-handed alpha
Helix 43
43
D
62 76Right-handed alpha
Helix 44
44
D
85 92Right-handed alpha
Helix 45
45
D
93 96Right-handed 310
Helix 46
46
D
104 108Right-handed 310
Helix 47
47
D
139 148Right-handed alpha
Helix 48
48
D
163 166Right-handed 310
Helix 49
49
D
167 175Right-handed alpha
Helix 50
50
D
177 182Right-handed alpha
Helix 51
51
D
195 212Right-handed alpha
Helix 52
52
D
220 231Right-handed alpha
Helix 53
53
D
250 269Right-handed alpha
Helix 54
54
E
15 26Right-handed alpha
Helix 55
55
E
28 39Right-handed alpha
Helix 56
56
E
62 76Right-handed alpha
Helix 57
57
E
85 92Right-handed alpha
Helix 58
58
E
93 96Right-handed 310
Helix 59
59
E
104 108Right-handed 310
Helix 60
60
E
140 145Right-handed alpha
Helix 61
61
E
163 166Right-handed 310
Helix 62
62
E
167 173Right-handed alpha
Helix 63
63
E
195 212Right-handed alpha
Helix 64
64
E
220 230Right-handed alpha
Helix 65
65
E
250 269Right-handed alpha
Helix 66
66
F
2 6Right-handed alpha
Helix 67
67
F
12 26Right-handed alpha
Helix 68
68
F
28 39Right-handed alpha
Helix 69
69
F
62 76Right-handed alpha
Helix 70
70
F
85 92Right-handed alpha
Helix 71
71
F
93 96Right-handed 310
Helix 72
72
F
104 108Right-handed 310
Helix 73
73
F
139 149Right-handed alpha
Helix 74
74
F
163 166Right-handed 310
Helix 75
75
F
167 175Right-handed alpha
Helix 76
76
F
177 182Right-handed alpha
Helix 77
77
F
195 212Right-handed alpha
Helix 78
78
F
220 231Right-handed alpha
Helix 79
79
F
250 269Right-handed alpha
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There are 18 sheets in PDB entry 4DWZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
43 48parallel
Strand 3
A
110 114parallel
Strand 4
A
152 156parallel
Strand 5
A
189 192parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
57 58anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
248 249anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 83first strand
Strand 2
B
43 48parallel
Strand 3
B
110 114parallel
Strand 4
B
152 156parallel
Strand 5
B
189 192parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
57 58anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
248 249anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
111 114parallel
Strand 3
C
152 156parallel
Strand 4
C
189 192parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
57 58anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 245first strand
Strand 2
C
248 249anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 83first strand
Strand 2
D
43 48parallel
Strand 3
D
110 114parallel
Strand 4
D
152 156parallel
Strand 5
D
189 192parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
57 58anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 245first strand
Strand 2
D
248 249anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
79 83first strand
Strand 2
E
43 48parallel
Strand 3
E
110 114parallel
Strand 4
E
152 156parallel
Strand 5
E
189 192parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 52first strand
Strand 2
E
57 58anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
244 245first strand
Strand 2
E
248 249anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
79 83first strand
Strand 2
F
43 48parallel
Strand 3
F
110 114parallel
Strand 4
F
152 156parallel
Strand 5
F
189 192parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
51 52first strand
Strand 2
F
57 58anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
244 245first strand
Strand 2
F
248 249anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il