Analysis of interatomic Contacts of Structural Units in PDB entry:
4DX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DX8 entry

There are 8 chains in PDB entry 4DX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 55THR 196
B
 ASP 58THR 196
D
 ASP 58THR 196
E
 ASP 58THR 196
H
 GLU 8THR 197
I
 VAL 12THR 197
J
 GLU 8THR 197
K
 ALA 13THR 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4DX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
83 98Right-handed alpha
Helix 2
2
A
176 196Right-handed alpha
Helix 3
3
B
83 98Right-handed alpha
Helix 4
4
B
176 195Right-handed alpha
Helix 5
5
D
83 99Right-handed alpha
Helix 6
6
D
176 196Right-handed alpha
Helix 7
7
E
83 98Right-handed alpha
Helix 8
8
E
176 196Right-handed alpha
Helix 9
9
H
29 31Right-handed 310
Helix 10
10
H
63 76Right-handed alpha
Helix 11
11
H
135 142Right-handed alpha
Helix 12
12
H
150 171Right-handed alpha
Helix 13
13
H
172 179Right-handed alpha
Helix 14
14
H
181 185Right-handed alpha
Helix 15
15
H
193 196Right-handed 310
Helix 16
16
I
29 31Right-handed 310
Helix 17
17
I
65 76Right-handed alpha
Helix 18
18
I
135 139Right-handed alpha
Helix 19
19
I
156 169Right-handed alpha
Helix 20
20
I
172 178Right-handed alpha
Helix 21
21
I
181 185Right-handed alpha
Helix 22
22
I
193 196Right-handed 310
Helix 23
23
J
29 31Right-handed 310
Helix 24
24
J
63 75Right-handed alpha
Helix 25
25
J
154 168Right-handed alpha
Helix 26
26
J
172 178Right-handed alpha
Helix 27
27
J
181 185Right-handed alpha
Helix 28
28
K
64 76Right-handed alpha
Helix 29
29
K
155 169Right-handed alpha
Helix 30
30
K
172 178Right-handed alpha
Helix 31
31
K
181 185Right-handed alpha
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There are 10 sheets in PDB entry 4DX8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
61 74anti-parallel
Strand 5
A
167 174anti-parallel
Strand 6
A
153 160anti-parallel
Strand 7
A
138 145anti-parallel
Strand 8
J
186 191anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 134first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
109 115anti-parallel
Strand 4
B
61 75anti-parallel
Strand 5
B
166 173anti-parallel
Strand 6
B
153 160anti-parallel
Strand 7
B
138 145anti-parallel
Strand 8
H
186 191anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 134first strand
Strand 2
D
118 123anti-parallel
Strand 3
D
110 115anti-parallel
Strand 4
D
61 74anti-parallel
Strand 5
D
167 174anti-parallel
Strand 6
D
153 160anti-parallel
Strand 7
D
138 145anti-parallel
Strand 8
I
186 191anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 134first strand
Strand 2
E
118 123anti-parallel
Strand 3
E
110 115anti-parallel
Strand 4
E
61 74anti-parallel
Strand 5
E
167 174anti-parallel
Strand 6
E
153 160anti-parallel
Strand 7
E
138 145anti-parallel
Strand 8
K
186 191anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
51 52first strand
Strand 2
H
33 39anti-parallel
Strand 3
H
9 17anti-parallel
Strand 4
H
107 114parallel
Strand 5
H
92 98anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
54 57first strand
Strand 2
H
9 17anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
131 134anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
112 114first strand
Strand 2
I
13 17parallel
Strand 3
I
33 35anti-parallel
Strand 4
I
133 134anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
33 35first strand
Strand 2
J
10 17anti-parallel
Strand 3
J
54 56anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
33 35first strand
Strand 2
J
10 17anti-parallel
Strand 3
J
107 114parallel
Strand 4
J
92 98anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
14 15first strand
Strand 2
K
113 114parallel
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