Analysis of interatomic Contacts of Structural Units in PDB entry:
4DY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DY6 entry

There is 1 chain in PDB entry 4DY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4DY6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
44 55Right-handed alpha
Helix 3
3
A
56 62Right-handed 310
Helix 4
4
A
79 81Right-handed 310
Helix 5
5
A
82 92Right-handed alpha
Helix 6
6
A
157 161Right-handed 310
Helix 7
7
A
162 167Right-handed alpha
Helix 8
8
A
252 262Right-handed alpha
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There are 3 sheets in PDB entry 4DY6. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
2 7parallel
Strand 3
A
38 43parallel
Strand 4
A
63 68parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
96 108anti-parallel
Strand 3
A
233 247anti-parallel
Strand 4
A
207 211anti-parallel
Strand 5
A
133 139anti-parallel
Strand 6
A
142 155anti-parallel
Strand 7
A
178 186anti-parallel
Strand 8
A
199 202anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
96 108anti-parallel
Strand 3
A
233 247anti-parallel
Strand 4
A
207 211anti-parallel
Strand 5
A
133 139anti-parallel
Strand 6
A
142 155anti-parallel
Strand 7
A
123 128anti-parallel
Strand 8
A
217 221anti-parallel
Strand 9
A
224 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il