Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYE entry

There is 1 chain in PDB entry 4DYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLY 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4DYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 66Right-handed alpha
Helix 2
2
A
72 80Right-handed alpha
Helix 3
3
A
82 111Right-handed alpha
Helix 4
4
A
113 118Right-handed alpha
Helix 5
5
A
133 137Right-handed 310
Helix 6
6
A
144 161Right-handed alpha
Helix 7
7
A
172 187Right-handed alpha
Helix 8
8
A
201 213Right-handed alpha
Helix 9
9
A
214 216Right-handed 310
Helix 10
10
A
225 237Right-handed alpha
Helix 11
11
A
249 251Right-handed 310
Helix 12
12
A
252 259Right-handed alpha
Helix 13
13
A
268 273Right-handed alpha
Helix 14
14
A
274 289Right-handed alpha
Helix 15
15
A
300 313Right-handed alpha
Helix 16
16
A
324 328Right-handed 310
Helix 17
17
A
356 371Right-handed alpha
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There are 3 sheets in PDB entry 4DYE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 20first strand
Strand 2
A
25 38anti-parallel
Strand 3
A
43 49anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
342 344anti-parallel
Strand 3
A
338 339anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
164 168parallel
Strand 3
A
191 195parallel
Strand 4
A
219 221parallel
Strand 5
A
241 243parallel
Strand 6
A
264 267parallel
Strand 7
A
291 294parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il