Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYJ entry

There are 4 chains in PDB entry 4DYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 26LEU 74
A
 ALA 76ASP 409
B
 PRO 26LEU 74
B
 ALA 76ASP 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4DYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 42Right-handed 310
Helix 2
2
A
50 65Right-handed alpha
Helix 3
3
A
74 80Right-handed alpha
Helix 4
4
A
82 93Right-handed alpha
Helix 5
5
A
102 112Right-handed alpha
Helix 6
6
A
125 132Right-handed alpha
Helix 7
7
A
133 136Right-handed 310
Helix 8
8
A
143 157Right-handed alpha
Helix 9
9
A
181 193Right-handed alpha
Helix 10
10
A
210 232Right-handed alpha
Helix 11
11
A
235 239Right-handed 310
Helix 12
12
A
245 252Right-handed alpha
Helix 13
13
A
253 257Right-handed 310
Helix 14
14
A
263 267Right-handed 310
Helix 15
15
A
300 304Right-handed 310
Helix 16
16
A
319 323Right-handed 310
Helix 17
17
A
325 329Right-handed 310
Helix 18
18
A
380 389Right-handed alpha
Helix 19
19
A
392 403Right-handed alpha
Helix 20
20
B
38 42Right-handed 310
Helix 21
21
B
50 65Right-handed alpha
Helix 22
22
B
74 80Right-handed alpha
Helix 23
23
B
82 93Right-handed alpha
Helix 24
24
B
102 112Right-handed alpha
Helix 25
25
B
125 133Right-handed alpha
Helix 26
26
B
134 136Right-handed 310
Helix 27
27
B
143 158Right-handed alpha
Helix 28
28
B
181 193Right-handed alpha
Helix 29
29
B
210 232Right-handed alpha
Helix 30
30
B
235 239Right-handed 310
Helix 31
31
B
245 252Right-handed alpha
Helix 32
32
B
253 256Right-handed 310
Helix 33
33
B
263 268Right-handed 310
Helix 34
34
B
300 304Right-handed 310
Helix 35
35
B
319 323Right-handed 310
Helix 36
36
B
325 329Right-handed 310
Helix 37
37
B
380 389Right-handed alpha
Helix 38
38
B
392 403Right-handed alpha
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There are 9 sheets in PDB entry 4DYJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
333 336anti-parallel
Strand 3
A
367 374anti-parallel
Strand 4
A
281 293anti-parallel
Strand 5
A
377 379first strand
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
281 293anti-parallel
Strand 4
A
367 374anti-parallel
Strand 5
A
44 49first strand
Strand 6
A
405 408parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
97 100parallel
Strand 3
A
69 73parallel
Strand 4
A
259 262parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
161 166parallel
Strand 3
A
197 203parallel
Strand 4
A
240 242parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
305 306anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 342first strand
Strand 2
B
333 336anti-parallel
Strand 3
B
367 374anti-parallel
Strand 4
B
281 293anti-parallel
Strand 5
B
377 379first strand
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 355first strand
Strand 2
B
311 316anti-parallel
Strand 3
B
281 293anti-parallel
Strand 4
B
367 374anti-parallel
Strand 5
B
44 49first strand
Strand 6
B
405 408parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 120first strand
Strand 2
B
97 100parallel
Strand 3
B
69 73parallel
Strand 4
B
259 262parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
161 166parallel
Strand 3
B
197 203parallel
Strand 4
B
240 242parallel
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