Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYK entry

There are 2 chains in PDB entry 4DYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6ASP 442
B
 ASN 6ASP 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4DYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed alpha
Helix 2
2
A
74 81Right-handed 310
Helix 3
3
A
88 96Right-handed alpha
Helix 4
4
A
96 105Right-handed alpha
Helix 5
5
A
106 124Right-handed alpha
Helix 6
6
A
135 147Right-handed alpha
Helix 7
7
A
166 181Right-handed alpha
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
200 215Right-handed alpha
Helix 10
10
A
225 237Right-handed alpha
Helix 11
11
A
239 247Right-handed alpha
Helix 12
12
A
263 274Right-handed alpha
Helix 13
13
A
280 287Right-handed alpha
Helix 14
14
A
293 301Right-handed alpha
Helix 15
15
A
310 314Right-handed 310
Helix 16
16
A
318 335Right-handed alpha
Helix 17
17
A
341 350Right-handed alpha
Helix 18
18
A
350 358Right-handed alpha
Helix 19
19
A
381 385Right-handed 310
Helix 20
20
A
389 398Right-handed alpha
Helix 21
21
A
399 401Right-handed 310
Helix 22
22
A
423 442Right-handed alpha
Helix 23
23
B
45 50Right-handed alpha
Helix 24
24
B
74 81Right-handed 310
Helix 25
25
B
88 96Right-handed alpha
Helix 26
26
B
96 105Right-handed alpha
Helix 27
27
B
106 124Right-handed alpha
Helix 28
28
B
135 147Right-handed alpha
Helix 29
29
B
166 181Right-handed alpha
Helix 30
30
B
195 199Right-handed 310
Helix 31
31
B
200 215Right-handed alpha
Helix 32
32
B
225 237Right-handed alpha
Helix 33
33
B
239 247Right-handed alpha
Helix 34
34
B
263 274Right-handed alpha
Helix 35
35
B
280 287Right-handed alpha
Helix 36
36
B
293 300Right-handed alpha
Helix 37
37
B
310 314Right-handed 310
Helix 38
38
B
318 335Right-handed alpha
Helix 39
39
B
341 349Right-handed alpha
Helix 40
40
B
350 357Right-handed alpha
Helix 41
41
B
381 385Right-handed 310
Helix 42
42
B
389 398Right-handed alpha
Helix 43
43
B
399 401Right-handed 310
Helix 44
44
B
423 442Right-handed alpha
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There are 8 sheets in PDB entry 4DYK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
8 17anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
38 44anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
8 17anti-parallel
Strand 3
A
53 66parallel
Strand 4
A
374 378anti-parallel
Strand 5
A
403 408anti-parallel
Strand 6
A
411 415anti-parallel
Strand 7
A
418 419anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
126 132parallel
Strand 3
A
149 156parallel
Strand 4
A
187 193parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
254 258parallel
Strand 3
A
276 279parallel
Strand 4
A
304 306parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
10 17anti-parallel
Strand 3
B
30 35anti-parallel
Strand 4
B
38 44anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
10 17anti-parallel
Strand 3
B
56 66parallel
Strand 4
B
374 378anti-parallel
Strand 5
B
403 408anti-parallel
Strand 6
B
411 415anti-parallel
Strand 7
B
418 419anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
126 131parallel
Strand 3
B
149 156parallel
Strand 4
B
187 193parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 222first strand
Strand 2
B
254 258parallel
Strand 3
B
276 279parallel
Strand 4
B
304 306parallel
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