Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYM entry

There is 1 chain in PDB entry 4DYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 207ASP 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4DYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
238 240Right-handed 310
Helix 2
2
A
241 255Right-handed alpha
Helix 3
3
A
291 298Right-handed alpha
Helix 4
4
A
301 321Right-handed alpha
Helix 5
5
A
338 340Right-handed 310
Helix 6
6
A
378 382Right-handed 310
Helix 7
7
A
383 388Right-handed alpha
Helix 8
8
A
395 416Right-handed alpha
Helix 9
9
A
440 449Right-handed alpha
Helix 10
10
A
458 463Right-handed 310
Helix 11
11
A
464 476Right-handed alpha
Helix 12
12
A
481 485Right-handed 310
Helix 13
13
A
487 498Right-handed alpha
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There are 3 sheets in PDB entry 4DYM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 217first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
230 236anti-parallel
Strand 4
A
276 283anti-parallel
Strand 5
A
265 273anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 290first strand
Strand 2
A
342 344anti-parallel
Strand 3
A
350 352anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
359 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il