Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYO entry

There is 1 chain in PDB entry 4DYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7TYR 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 4DYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 27Right-handed alpha
Helix 2
2
A
30 45Right-handed alpha
Helix 3
3
A
125 130Right-handed 310
Helix 4
4
A
168 172Right-handed 310
Helix 5
5
A
194 201Right-handed alpha
Helix 6
6
A
217 229Right-handed alpha
Helix 7
7
A
231 233Right-handed 310
Helix 8
8
A
262 280Right-handed alpha
Helix 9
9
A
300 304Right-handed 310
Helix 10
10
A
314 325Right-handed alpha
Helix 11
11
A
331 337Right-handed alpha
Helix 12
12
A
355 359Right-handed 310
Helix 13
13
A
384 399Right-handed alpha
Helix 14
14
A
416 426Right-handed alpha
Helix 15
15
A
448 470Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4DYO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
63 68parallel
Strand 3
A
72 78anti-parallel
Strand 4
A
292 298anti-parallel
Strand 5
A
88 94parallel
Strand 6
A
341 345parallel
Strand 7
A
428 433parallel
Strand 8
A
372 374anti-parallel
Strand 9
A
403 405parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 110first strand
Strand 2
A
113 121anti-parallel
Strand 3
A
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 156first strand
Strand 2
A
134 143anti-parallel
Strand 3
A
235 244anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 251first strand
Strand 2
A
257 260anti-parallel
Strand 3
A
444 447anti-parallel
Strand 4
A
435 437anti-parallel
Strand 5
A
348 349parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il