Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYP entry

There are 2 chains in PDB entry 4DYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22ASP 497
B
 ALA 22GLY 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 4DYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 47Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
112 124Right-handed alpha
Helix 5
5
A
130 148Right-handed alpha
Helix 6
6
A
150 155Right-handed alpha
Helix 7
7
A
160 167Right-handed 310
Helix 8
8
A
177 184Right-handed alpha
Helix 9
9
A
185 198Right-handed alpha
Helix 10
10
A
213 230Right-handed alpha
Helix 11
11
A
232 244Right-handed alpha
Helix 12
12
A
249 263Right-handed alpha
Helix 13
13
A
277 288Right-handed alpha
Helix 14
14
A
290 295Right-handed alpha
Helix 15
15
A
301 308Right-handed alpha
Helix 16
16
A
321 334Right-handed alpha
Helix 17
17
A
340 349Right-handed alpha
Helix 18
18
A
354 358Right-handed 310
Helix 19
19
A
370 374Right-handed 310
Helix 20
20
A
421 428Right-handed alpha
Helix 21
21
A
440 450Right-handed alpha
Helix 22
22
B
23 47Right-handed alpha
Helix 23
23
B
50 55Right-handed alpha
Helix 24
24
B
56 71Right-handed alpha
Helix 25
25
B
72 82Right-handed alpha
Helix 26
26
B
113 124Right-handed alpha
Helix 27
27
B
129 148Right-handed alpha
Helix 28
28
B
150 158Right-handed alpha
Helix 29
29
B
162 167Right-handed 310
Helix 30
30
B
177 184Right-handed alpha
Helix 31
31
B
185 199Right-handed alpha
Helix 32
32
B
215 228Right-handed alpha
Helix 33
33
B
232 244Right-handed alpha
Helix 34
34
B
249 263Right-handed alpha
Helix 35
35
B
277 288Right-handed alpha
Helix 36
36
B
290 295Right-handed alpha
Helix 37
37
B
301 309Right-handed alpha
Helix 38
38
B
321 334Right-handed alpha
Helix 39
39
B
340 349Right-handed alpha
Helix 40
40
B
354 358Right-handed 310
Helix 41
41
B
370 374Right-handed 310
Helix 42
42
B
421 427Right-handed alpha
Helix 43
43
B
442 451Right-handed alpha
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There are 6 sheets in PDB entry 4DYP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
109 111anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
103 106anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
111 112anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 100first strand
Strand 2
B
103 108anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 316first strand
Strand 2
B
375 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il