Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYS entry

There are 3 chains in PDB entry 4DYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 31PHE 495
B
 GLY 31PHE 495
C
 GLY 31PHE 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 4DYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 53Right-handed alpha
Helix 2
2
A
58 61Right-handed 310
Helix 3
3
A
62 78Right-handed alpha
Helix 4
4
A
119 130Right-handed alpha
Helix 5
5
A
135 154Right-handed alpha
Helix 6
6
A
156 164Right-handed alpha
Helix 7
7
A
166 173Right-handed 310
Helix 8
8
A
183 190Right-handed alpha
Helix 9
9
A
191 209Right-handed alpha
Helix 10
10
A
214 236Right-handed alpha
Helix 11
11
A
238 251Right-handed alpha
Helix 12
12
A
255 269Right-handed alpha
Helix 13
13
A
283 293Right-handed alpha
Helix 14
14
A
296 301Right-handed alpha
Helix 15
15
A
306 315Right-handed alpha
Helix 16
16
A
327 341Right-handed alpha
Helix 17
17
A
346 355Right-handed alpha
Helix 18
18
A
360 364Right-handed 310
Helix 19
19
A
376 380Right-handed 310
Helix 20
20
A
427 433Right-handed alpha
Helix 21
21
A
434 436Right-handed 310
Helix 22
22
A
444 457Right-handed alpha
Helix 23
23
B
32 53Right-handed alpha
Helix 24
24
B
58 61Right-handed 310
Helix 25
25
B
62 77Right-handed alpha
Helix 26
26
B
119 130Right-handed alpha
Helix 27
27
B
136 154Right-handed alpha
Helix 28
28
B
156 163Right-handed alpha
Helix 29
29
B
169 173Right-handed 310
Helix 30
30
B
185 190Right-handed alpha
Helix 31
31
B
191 209Right-handed alpha
Helix 32
32
B
215 236Right-handed alpha
Helix 33
33
B
238 250Right-handed alpha
Helix 34
34
B
255 269Right-handed alpha
Helix 35
35
B
283 293Right-handed alpha
Helix 36
36
B
296 301Right-handed alpha
Helix 37
37
B
307 315Right-handed alpha
Helix 38
38
B
327 340Right-handed alpha
Helix 39
39
B
346 355Right-handed alpha
Helix 40
40
B
360 364Right-handed 310
Helix 41
41
B
405 410Right-handed alpha
Helix 42
42
B
427 433Right-handed alpha
Helix 43
43
B
445 457Right-handed alpha
Helix 44
44
C
32 53Right-handed alpha
Helix 45
45
C
58 61Right-handed 310
Helix 46
46
C
62 78Right-handed alpha
Helix 47
47
C
79 83Right-handed 310
Helix 48
48
C
119 130Right-handed alpha
Helix 49
49
C
135 154Right-handed alpha
Helix 50
50
C
156 164Right-handed alpha
Helix 51
51
C
168 173Right-handed 310
Helix 52
52
C
183 190Right-handed alpha
Helix 53
53
C
191 209Right-handed alpha
Helix 54
54
C
214 236Right-handed alpha
Helix 55
55
C
238 251Right-handed alpha
Helix 56
56
C
255 269Right-handed alpha
Helix 57
57
C
283 292Right-handed alpha
Helix 58
58
C
296 301Right-handed alpha
Helix 59
59
C
307 315Right-handed alpha
Helix 60
60
C
327 340Right-handed alpha
Helix 61
61
C
346 355Right-handed alpha
Helix 62
62
C
427 433Right-handed alpha
Helix 63
63
C
444 457Right-handed alpha
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There are 11 sheets in PDB entry 4DYS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 105first strand
Strand 2
A
110 118anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
381 384anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
B
462 463anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
C
422 423anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
117 118anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
110 114anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 321first strand
Strand 2
B
382 384anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
470 471anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 423first strand
Strand 2
C
462 463anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 106first strand
Strand 2
C
109 118anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 322first strand
Strand 2
C
381 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il