Analysis of interatomic Contacts of Structural Units in PDB entry:
4DYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DYT entry

There are 3 chains in PDB entry 4DYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19PHE 489
B
 ASN 21PHE 489
C
 ASN 21PHE 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 4DYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 45Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
113 124Right-handed alpha
Helix 5
5
A
129 148Right-handed alpha
Helix 6
6
A
151 157Right-handed alpha
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
178 183Right-handed alpha
Helix 9
9
A
185 197Right-handed alpha
Helix 10
10
A
216 228Right-handed alpha
Helix 11
11
A
232 243Right-handed alpha
Helix 12
12
A
249 266Right-handed alpha
Helix 13
13
A
277 288Right-handed alpha
Helix 14
14
A
290 295Right-handed alpha
Helix 15
15
A
301 310Right-handed alpha
Helix 16
16
A
321 334Right-handed alpha
Helix 17
17
A
340 349Right-handed alpha
Helix 18
18
A
354 358Right-handed 310
Helix 19
19
A
421 426Right-handed alpha
Helix 20
20
A
439 448Right-handed alpha
Helix 21
21
B
24 47Right-handed alpha
Helix 22
22
B
50 55Right-handed alpha
Helix 23
23
B
56 70Right-handed alpha
Helix 24
24
B
114 124Right-handed alpha
Helix 25
25
B
129 148Right-handed alpha
Helix 26
26
B
151 156Right-handed alpha
Helix 27
27
B
160 167Right-handed 310
Helix 28
28
B
177 184Right-handed alpha
Helix 29
29
B
185 199Right-handed alpha
Helix 30
30
B
213 228Right-handed alpha
Helix 31
31
B
232 244Right-handed alpha
Helix 32
32
B
249 263Right-handed alpha
Helix 33
33
B
277 287Right-handed alpha
Helix 34
34
B
290 295Right-handed alpha
Helix 35
35
B
301 309Right-handed alpha
Helix 36
36
B
321 334Right-handed alpha
Helix 37
37
B
340 349Right-handed alpha
Helix 38
38
B
421 427Right-handed alpha
Helix 39
39
B
439 449Right-handed alpha
Helix 40
40
C
22 47Right-handed alpha
Helix 41
41
C
56 60Right-handed 310
Helix 42
42
C
61 70Right-handed alpha
Helix 43
43
C
112 122Right-handed alpha
Helix 44
44
C
130 148Right-handed alpha
Helix 45
45
C
150 157Right-handed alpha
Helix 46
46
C
177 183Right-handed alpha
Helix 47
47
C
185 203Right-handed alpha
Helix 48
48
C
208 230Right-handed alpha
Helix 49
49
C
232 245Right-handed alpha
Helix 50
50
C
249 264Right-handed alpha
Helix 51
51
C
277 285Right-handed alpha
Helix 52
52
C
301 309Right-handed alpha
Helix 53
53
C
323 333Right-handed alpha
Helix 54
54
C
342 348Right-handed alpha
Helix 55
55
C
421 427Right-handed alpha
Helix 56
56
C
439 451Right-handed alpha
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There are 11 sheets in PDB entry 4DYT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
107 112anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
464 465anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 417first strand
Strand 2
C
456 457anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
103 105anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
464 465anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
C
416 417anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
375 378anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
385 386first strand
Strand 2
C
464 465anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il