Analysis of interatomic Contacts of Structural Units in PDB entry:
4DZ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DZ1 entry

There is 1 chain in PDB entry 4DZ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 25LYS 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4DZ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 67Right-handed alpha
Helix 2
2
A
76 86Right-handed alpha
Helix 3
3
A
99 104Right-handed alpha
Helix 4
4
A
131 138Right-handed 310
Helix 5
5
A
147 156Right-handed alpha
Helix 6
6
A
157 160Right-handed 310
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
172 182Right-handed alpha
Helix 9
9
A
192 201Right-handed alpha
Helix 10
10
A
226 240Right-handed alpha
Helix 11
11
A
240 252Right-handed alpha
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There are 3 sheets in PDB entry 4DZ1. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
30 35parallel
Strand 3
A
91 97parallel
Strand 4
A
206 223anti-parallel
Strand 5
A
106 108anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
30 35parallel
Strand 3
A
91 97parallel
Strand 4
A
206 223anti-parallel
Strand 5
A
113 122anti-parallel
Strand 6
A
187 191anti-parallel
Strand 7
A
140 143parallel
Strand 8
A
168 170parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
51 52anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il