Analysis of interatomic Contacts of Structural Units in PDB entry:
4DZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DZA entry

There are 2 chains in PDB entry 4DZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37LEU 73
A
 GLY 75ASP 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4DZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 64Right-handed alpha
Helix 2
2
A
73 79Right-handed alpha
Helix 3
3
A
81 92Right-handed alpha
Helix 4
4
A
101 111Right-handed alpha
Helix 5
5
A
124 132Right-handed alpha
Helix 6
6
A
142 157Right-handed alpha
Helix 7
7
A
180 192Right-handed alpha
Helix 8
8
A
209 232Right-handed alpha
Helix 9
9
A
234 238Right-handed 310
Helix 10
10
A
244 251Right-handed alpha
Helix 11
11
A
252 256Right-handed 310
Helix 12
12
A
262 267Right-handed 310
Helix 13
13
A
298 302Right-handed 310
Helix 14
14
A
317 321Right-handed 310
Helix 15
15
A
323 327Right-handed 310
Helix 16
16
A
378 387Right-handed alpha
Helix 17
17
A
389 401Right-handed alpha
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There are 5 sheets in PDB entry 4DZA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
331 334anti-parallel
Strand 3
A
365 372anti-parallel
Strand 4
A
375 377anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
331 334anti-parallel
Strand 3
A
365 372anti-parallel
Strand 4
A
279 284anti-parallel
Strand 5
A
44 48anti-parallel
Strand 6
A
402 406parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
196 202parallel
Strand 3
A
160 165parallel
Strand 4
A
136 140parallel
Strand 5
A
116 119parallel
Strand 6
A
96 99parallel
Strand 7
A
69 72parallel
Strand 8
A
259 261parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
309 314anti-parallel
Strand 3
A
350 353anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
303 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il