Analysis of interatomic Contacts of Structural Units in PDB entry:
4DZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DZI entry

There are 4 chains in PDB entry 4DZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLY 393
B
 ALA 3GLY 393
C
 ALA 3SER 398
D
 ALA 3GLY 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 4DZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 31Right-handed 310
Helix 2
2
A
70 75Right-handed alpha
Helix 3
3
A
83 87Right-handed 310
Helix 4
4
A
92 100Right-handed 310
Helix 5
5
A
101 113Right-handed alpha
Helix 6
6
A
122 125Right-handed 310
Helix 7
7
A
126 131Right-handed alpha
Helix 8
8
A
134 153Right-handed alpha
Helix 9
9
A
172 186Right-handed alpha
Helix 10
10
A
209 211Right-handed 310
Helix 11
11
A
212 223Right-handed alpha
Helix 12
12
A
235 242Right-handed alpha
Helix 13
13
A
255 263Right-handed alpha
Helix 14
14
A
264 277Right-handed alpha
Helix 15
15
A
278 283Right-handed alpha
Helix 16
16
A
296 312Right-handed alpha
Helix 17
17
A
313 316Right-handed 310
Helix 18
18
A
319 327Right-handed alpha
Helix 19
19
A
337 346Right-handed alpha
Helix 20
20
A
347 350Right-handed 310
Helix 21
21
A
364 372Right-handed 310
Helix 22
22
A
376 385Right-handed alpha
Helix 23
23
A
385 393Right-handed alpha
Helix 24
24
B
27 31Right-handed 310
Helix 25
25
B
70 76Right-handed alpha
Helix 26
26
B
83 87Right-handed 310
Helix 27
27
B
92 100Right-handed 310
Helix 28
28
B
101 113Right-handed alpha
Helix 29
29
B
122 125Right-handed 310
Helix 30
30
B
126 131Right-handed alpha
Helix 31
31
B
134 153Right-handed alpha
Helix 32
32
B
172 185Right-handed alpha
Helix 33
33
B
209 211Right-handed 310
Helix 34
34
B
212 223Right-handed alpha
Helix 35
35
B
235 242Right-handed alpha
Helix 36
36
B
256 263Right-handed alpha
Helix 37
37
B
264 277Right-handed alpha
Helix 38
38
B
278 283Right-handed alpha
Helix 39
39
B
296 312Right-handed alpha
Helix 40
40
B
313 316Right-handed 310
Helix 41
41
B
319 327Right-handed alpha
Helix 42
42
B
337 346Right-handed alpha
Helix 43
43
B
347 350Right-handed 310
Helix 44
44
B
364 372Right-handed 310
Helix 45
45
B
376 385Right-handed alpha
Helix 46
46
B
385 393Right-handed alpha
Helix 47
47
C
27 31Right-handed 310
Helix 48
48
C
70 76Right-handed alpha
Helix 49
49
C
83 87Right-handed 310
Helix 50
50
C
92 100Right-handed 310
Helix 51
51
C
101 113Right-handed alpha
Helix 52
52
C
122 125Right-handed 310
Helix 53
53
C
126 131Right-handed alpha
Helix 54
54
C
134 153Right-handed alpha
Helix 55
55
C
172 186Right-handed alpha
Helix 56
56
C
209 211Right-handed 310
Helix 57
57
C
212 223Right-handed alpha
Helix 58
58
C
235 242Right-handed alpha
Helix 59
59
C
256 263Right-handed alpha
Helix 60
60
C
264 277Right-handed alpha
Helix 61
61
C
278 283Right-handed alpha
Helix 62
62
C
296 312Right-handed alpha
Helix 63
63
C
313 316Right-handed 310
Helix 64
64
C
319 327Right-handed alpha
Helix 65
65
C
337 346Right-handed alpha
Helix 66
66
C
347 350Right-handed 310
Helix 67
67
C
364 373Right-handed 310
Helix 68
68
C
376 385Right-handed alpha
Helix 69
69
C
385 393Right-handed alpha
Helix 70
70
D
27 31Right-handed 310
Helix 71
71
D
70 76Right-handed alpha
Helix 72
72
D
83 87Right-handed 310
Helix 73
73
D
92 100Right-handed 310
Helix 74
74
D
101 113Right-handed alpha
Helix 75
75
D
122 125Right-handed 310
Helix 76
76
D
126 131Right-handed alpha
Helix 77
77
D
134 153Right-handed alpha
Helix 78
78
D
172 186Right-handed alpha
Helix 79
79
D
209 211Right-handed 310
Helix 80
80
D
212 223Right-handed alpha
Helix 81
81
D
235 242Right-handed alpha
Helix 82
82
D
256 261Right-handed alpha
Helix 83
83
D
264 277Right-handed alpha
Helix 84
84
D
278 283Right-handed alpha
Helix 85
85
D
296 312Right-handed alpha
Helix 86
86
D
313 316Right-handed 310
Helix 87
87
D
319 327Right-handed alpha
Helix 88
88
D
337 346Right-handed alpha
Helix 89
89
D
347 350Right-handed 310
Helix 90
90
D
364 372Right-handed 310
Helix 91
91
D
376 385Right-handed alpha
Helix 92
92
D
385 393Right-handed alpha
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There are 16 sheets in PDB entry 4DZI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
114 120parallel
Strand 3
A
162 164parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
44 48anti-parallel
Strand 3
A
51 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
90 91anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
226 229parallel
Strand 3
A
288 291parallel
Strand 4
A
328 330parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 14first strand
Strand 2
B
114 120parallel
Strand 3
B
162 164parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
44 48anti-parallel
Strand 3
B
51 52anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
90 91anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
226 229parallel
Strand 3
B
288 291parallel
Strand 4
B
328 330parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 14first strand
Strand 2
C
114 120parallel
Strand 3
C
162 164parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
44 48anti-parallel
Strand 3
C
51 52anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
90 91anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 192first strand
Strand 2
C
226 229parallel
Strand 3
C
288 291parallel
Strand 4
C
328 330parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 14first strand
Strand 2
D
114 120parallel
Strand 3
D
162 164parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 39first strand
Strand 2
D
44 48anti-parallel
Strand 3
D
51 52anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
90 91anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
191 192first strand
Strand 2
D
226 229parallel
Strand 3
D
288 291parallel
Strand 4
D
328 330parallel
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