Analysis of interatomic Contacts of Structural Units in PDB entry:
4E04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E04 entry

There are 2 chains in PDB entry 4E04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13LEU 320
B
 ASP 11LEU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4E04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed 310
Helix 2
2
A
47 53Right-handed alpha
Helix 3
3
A
55 60Right-handed alpha
Helix 4
4
A
63 68Right-handed alpha
Helix 5
5
A
69 82Right-handed alpha
Helix 6
6
A
131 146Right-handed alpha
Helix 7
7
A
148 165Right-handed alpha
Helix 8
8
A
200 204Right-handed 310
Helix 9
9
A
205 215Right-handed alpha
Helix 10
10
A
253 263Right-handed alpha
Helix 11
11
A
294 317Right-handed alpha
Helix 12
12
B
47 52Right-handed alpha
Helix 13
13
B
55 60Right-handed alpha
Helix 14
14
B
63 67Right-handed 310
Helix 15
15
B
69 82Right-handed alpha
Helix 16
16
B
133 145Right-handed alpha
Helix 17
17
B
148 165Right-handed alpha
Helix 18
18
B
200 204Right-handed 310
Helix 19
19
B
205 215Right-handed alpha
Helix 20
20
B
253 263Right-handed alpha
Helix 21
21
B
294 318Right-handed alpha
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There are 4 sheets in PDB entry 4E04. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
228 231anti-parallel
Strand 3
A
41 45anti-parallel
Strand 4
A
31 35anti-parallel
Strand 5
A
114 120anti-parallel
Strand 6
A
102 111anti-parallel
Strand 7
A
88 95anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
278 287anti-parallel
Strand 5
A
267 275anti-parallel
Strand 6
A
217 220anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
228 231anti-parallel
Strand 3
B
41 45anti-parallel
Strand 4
B
31 35anti-parallel
Strand 5
B
114 120anti-parallel
Strand 6
B
103 111anti-parallel
Strand 7
B
89 94anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
180 187anti-parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
278 287anti-parallel
Strand 5
B
267 275anti-parallel
Strand 6
B
217 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il