Analysis of interatomic Contacts of Structural Units in PDB entry:
4E08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E08 entry

There are 2 chains in PDB entry 4E08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 186
B
 MET 1TYR 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4E08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
58 61Right-handed 310
Helix 3
3
A
73 83Right-handed alpha
Helix 4
4
A
83 96Right-handed alpha
Helix 5
5
A
106 113Right-handed alpha
Helix 6
6
A
124 131Right-handed 310
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
157 171Right-handed alpha
Helix 9
9
A
171 183Right-handed alpha
Helix 10
10
B
14 28Right-handed alpha
Helix 11
11
B
58 61Right-handed 310
Helix 12
12
B
73 82Right-handed alpha
Helix 13
13
B
83 96Right-handed alpha
Helix 14
14
B
106 113Right-handed alpha
Helix 15
15
B
124 126Right-handed 310
Helix 16
16
B
127 132Right-handed alpha
Helix 17
17
B
154 156Right-handed 310
Helix 18
18
B
157 171Right-handed alpha
Helix 19
19
B
171 183Right-handed alpha
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There are 5 sheets in PDB entry 4E08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
31 36parallel
Strand 3
A
4 9parallel
Strand 4
A
67 70parallel
Strand 5
A
99 103parallel
Strand 6
A
149 152parallel
Strand 7
A
143 146anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
50 52anti-parallel
Strand 3
B
50 52anti-parallel
Strand 4
B
43 44anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
136 137parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
31 36parallel
Strand 3
B
4 9parallel
Strand 4
B
67 70parallel
Strand 5
B
99 103parallel
Strand 6
B
149 152parallel
Strand 7
B
143 146anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
136 137parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il