Analysis of interatomic Contacts of Structural Units in PDB entry:
4E0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E0E entry

There are 4 chains in PDB entry 4E0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20ILE 188
B
 ALA 20ILE 188
C
 ALA 20ILE 188
D
 ALA 20ILE 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4E0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
129 133Right-handed 310
Helix 2
2
A
135 141Right-handed alpha
Helix 3
3
A
180 188Right-handed alpha
Helix 4
4
B
129 133Right-handed 310
Helix 5
5
B
135 141Right-handed alpha
Helix 6
6
B
180 188Right-handed alpha
Helix 7
7
C
131 133Right-handed 310
Helix 8
8
C
135 141Right-handed alpha
Helix 9
9
C
180 188Right-handed alpha
Helix 10
10
D
131 133Right-handed 310
Helix 11
11
D
135 141Right-handed alpha
Helix 12
12
D
180 188Right-handed alpha
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There are 8 sheets in PDB entry 4E0E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
150 156anti-parallel
Strand 5
A
125 128anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 58first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
161 169anti-parallel
Strand 4
A
112 119anti-parallel
Strand 5
A
102 109anti-parallel
Strand 6
A
93 99anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
150 156anti-parallel
Strand 5
B
125 128anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 58first strand
Strand 2
B
64 71anti-parallel
Strand 3
B
161 169anti-parallel
Strand 4
B
112 119anti-parallel
Strand 5
B
102 109anti-parallel
Strand 6
B
93 99anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 42first strand
Strand 2
C
29 36anti-parallel
Strand 3
C
79 85anti-parallel
Strand 4
C
149 156anti-parallel
Strand 5
C
125 129anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 58first strand
Strand 2
C
64 71anti-parallel
Strand 3
C
161 169anti-parallel
Strand 4
C
113 119anti-parallel
Strand 5
C
102 108anti-parallel
Strand 6
C
93 99anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 42first strand
Strand 2
D
29 36anti-parallel
Strand 3
D
79 85anti-parallel
Strand 4
D
149 156anti-parallel
Strand 5
D
125 129anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 58first strand
Strand 2
D
64 71anti-parallel
Strand 3
D
161 169anti-parallel
Strand 4
D
112 119anti-parallel
Strand 5
D
102 109anti-parallel
Strand 6
D
93 99anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il