Analysis of interatomic Contacts of Structural Units in PDB entry:
4E10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E10 entry

There are 11 chains in PDB entry 4E10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 104SER 404
A
 MET 406LEU 421
C
 C 1 A 2
C
 A 4 A 5
C
 A 7 A 11
C
 A 13 A 13
D
 G 18 A 21
D
 G 24 G 24
D
 A 27 A 27
D
 A 30 A 30
D
 G 32 G 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4E10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 121Right-handed alpha
Helix 2
2
A
128 141Right-handed alpha
Helix 3
3
A
146 161Right-handed alpha
Helix 4
4
A
165 185Right-handed alpha
Helix 5
5
A
188 193Right-handed 310
Helix 6
6
A
197 216Right-handed alpha
Helix 7
7
A
224 236Right-handed alpha
Helix 8
8
A
240 253Right-handed alpha
Helix 9
9
A
255 262Right-handed alpha
Helix 10
10
A
306 320Right-handed alpha
Helix 11
11
A
320 327Right-handed alpha
Helix 12
12
A
330 351Right-handed alpha
Helix 13
13
A
361 378Right-handed alpha
Helix 14
14
A
383 392Right-handed alpha
Helix 15
15
A
400 405Right-handed 310
Helix 16
16
A
410 419Right-handed alpha
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There are 2 sheets in PDB entry 4E10. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
408 409parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
299 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il