Analysis of interatomic Contacts of Structural Units in PDB entry:
4E1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4E1J entry

There are 4 chains in PDB entry 4E1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	ALA 519
B	GLY 26	ALA 519
C	HIS 7	ALA 519
D	GLY 26	ALA 519

There are 74 helices in PDB entry 4E1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	70	88	Right-handed alpha
Helix 2	2	A	92	94	Right-handed 310
Helix 3	3	A	130	140	Right-handed alpha
Helix 4	4	A	142	151	Right-handed alpha
Helix 5	5	A	158	170	Right-handed alpha
Helix 6	6	A	172	179	Right-handed alpha
Helix 7	7	A	187	196	Right-handed alpha
Helix 8	8	A	205	209	Right-handed alpha
Helix 9	9	A	222	230	Right-handed alpha
Helix 10	10	A	232	236	Right-handed 310
Helix 11	11	A	250	255	Right-handed alpha
Helix 12	12	A	265	274	Right-handed alpha
Helix 13	13	A	330	340	Right-handed alpha
Helix 14	14	A	351	356	Right-handed alpha
Helix 15	15	A	393	420	Right-handed alpha
Helix 16	16	A	433	437	Right-handed 310
Helix 17	17	A	438	450	Right-handed alpha
Helix 18	18	A	460	475	Right-handed alpha
Helix 19	19	A	479	486	Right-handed alpha
Helix 20	20	A	498	518	Right-handed alpha
Helix 21	21	B	70	88	Right-handed alpha
Helix 22	22	B	92	94	Right-handed 310
Helix 23	23	B	130	140	Right-handed alpha
Helix 24	24	B	142	151	Right-handed alpha
Helix 25	25	B	158	170	Right-handed alpha
Helix 26	26	B	172	179	Right-handed alpha
Helix 27	27	B	186	196	Right-handed alpha
Helix 28	28	B	205	209	Right-handed alpha
Helix 29	29	B	222	229	Right-handed alpha
Helix 30	30	B	232	236	Right-handed 310
Helix 31	31	B	266	274	Right-handed alpha
Helix 32	32	B	330	340	Right-handed alpha
Helix 33	33	B	351	357	Right-handed alpha
Helix 34	34	B	393	420	Right-handed alpha
Helix 35	35	B	433	437	Right-handed 310
Helix 36	36	B	438	450	Right-handed alpha
Helix 37	37	B	460	475	Right-handed alpha
Helix 38	38	B	479	486	Right-handed alpha
Helix 39	39	B	498	518	Right-handed alpha
Helix 40	40	C	12	24	Right-handed alpha
Helix 41	41	C	70	87	Right-handed alpha
Helix 42	42	C	130	140	Right-handed alpha
Helix 43	43	C	142	151	Right-handed alpha
Helix 44	44	C	158	170	Right-handed alpha
Helix 45	45	C	172	179	Right-handed alpha
Helix 46	46	C	186	196	Right-handed alpha
Helix 47	47	C	205	209	Right-handed alpha
Helix 48	48	C	222	229	Right-handed alpha
Helix 49	49	C	232	236	Right-handed 310
Helix 50	50	C	266	274	Right-handed alpha
Helix 51	51	C	330	340	Right-handed alpha
Helix 52	52	C	351	356	Right-handed alpha
Helix 53	53	C	393	420	Right-handed alpha
Helix 54	54	C	433	437	Right-handed 310
Helix 55	55	C	438	450	Right-handed alpha
Helix 56	56	C	460	474	Right-handed alpha
Helix 57	57	C	479	486	Right-handed alpha
Helix 58	58	C	498	518	Right-handed alpha
Helix 59	59	D	70	82	Right-handed alpha
Helix 60	60	D	130	140	Right-handed alpha
Helix 61	61	D	142	151	Right-handed alpha
Helix 62	62	D	158	170	Right-handed alpha
Helix 63	63	D	172	178	Right-handed alpha
Helix 64	64	D	186	196	Right-handed alpha
Helix 65	65	D	204	210	Right-handed alpha
Helix 66	66	D	222	229	Right-handed alpha
Helix 67	67	D	232	236	Right-handed 310
Helix 68	68	D	267	272	Right-handed alpha
Helix 69	69	D	331	340	Right-handed alpha
Helix 70	70	D	352	357	Right-handed 310
Helix 71	71	D	393	417	Right-handed alpha
Helix 72	72	D	433	437	Right-handed 310
Helix 73	73	D	438	450	Right-handed alpha
Helix 74	74	D	498	518	Right-handed alpha

There are 28 sheets in PDB entry 4E1J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	56	first strand
Strand 2	A	37	43	anti-parallel
Strand 3	A	27	33	anti-parallel
Strand 4	A	96	103	parallel
Strand 5	A	260	263	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	182	186	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	238	240	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	220	221	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	315	first strand
Strand 2	A	318	327	anti-parallel
Strand 3	A	290	295	anti-parallel
Strand 4	A	282	286	anti-parallel
Strand 5	A	429	432	parallel
Strand 6	A	453	456	parallel
Strand 7	A	489	493	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	384	386	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	56	first strand
Strand 2	B	37	43	anti-parallel
Strand 3	B	27	33	anti-parallel
Strand 4	B	96	103	parallel
Strand 5	B	260	265	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	112	first strand
Strand 2	B	182	185	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	238	240	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	220	221	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	315	first strand
Strand 2	B	318	327	anti-parallel
Strand 3	B	290	297	anti-parallel
Strand 4	B	282	286	anti-parallel
Strand 5	B	429	432	parallel
Strand 6	B	453	456	parallel
Strand 7	B	489	493	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	384	386	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	56	first strand
Strand 2	C	37	43	anti-parallel
Strand 3	C	28	33	anti-parallel
Strand 4	C	98	103	parallel
Strand 5	C	260	265	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	122	123	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	112	first strand
Strand 2	C	182	185	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	238	240	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	220	221	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	315	first strand
Strand 2	C	318	327	anti-parallel
Strand 3	C	290	295	anti-parallel
Strand 4	C	282	286	anti-parallel
Strand 5	C	429	432	parallel
Strand 6	C	453	456	parallel
Strand 7	C	489	493	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	384	386	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	37	40	anti-parallel
Strand 3	D	28	33	anti-parallel
Strand 4	D	98	103	parallel
Strand 5	D	260	265	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	122	123	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	238	239	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	220	221	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	315	first strand
Strand 2	D	318	327	anti-parallel
Strand 3	D	290	297	anti-parallel
Strand 4	D	283	286	anti-parallel
Strand 5	D	431	432	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	366	first strand
Strand 2	D	384	386	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	454	455	first strand
Strand 2	D	491	492	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4E1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
4E1J