Analysis of interatomic Contacts of Structural Units in PDB entry:
4E38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E38 entry

There are 3 chains in PDB entry 4E38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -3PRO 209
B
 PHE -3PRO 209
C
 HIS -17PRO 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4E38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 12Right-handed alpha
Helix 2
2
A
21 23Right-handed 310
Helix 3
3
A
24 35Right-handed alpha
Helix 4
4
A
48 60Right-handed alpha
Helix 5
5
A
72 83Right-handed alpha
Helix 6
6
A
93 104Right-handed alpha
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
137 147Right-handed alpha
Helix 9
9
A
164 170Right-handed alpha
Helix 10
10
A
180 183Right-handed 310
Helix 11
11
A
184 190Right-handed alpha
Helix 12
12
A
192 208Right-handed alpha
Helix 13
13
B
0 12Right-handed alpha
Helix 14
14
B
21 23Right-handed 310
Helix 15
15
B
24 35Right-handed alpha
Helix 16
16
B
47 60Right-handed alpha
Helix 17
17
B
72 83Right-handed alpha
Helix 18
18
B
93 104Right-handed alpha
Helix 19
19
B
113 123Right-handed alpha
Helix 20
20
B
137 147Right-handed alpha
Helix 21
21
B
164 170Right-handed alpha
Helix 22
22
B
180 183Right-handed 310
Helix 23
23
B
184 190Right-handed alpha
Helix 24
24
B
192 208Right-handed alpha
Helix 25
25
C
-11 12Right-handed alpha
Helix 26
26
C
21 23Right-handed 310
Helix 27
27
C
24 35Right-handed alpha
Helix 28
28
C
48 60Right-handed alpha
Helix 29
29
C
72 83Right-handed alpha
Helix 30
30
C
93 104Right-handed alpha
Helix 31
31
C
113 123Right-handed alpha
Helix 32
32
C
137 147Right-handed alpha
Helix 33
33
C
164 170Right-handed alpha
Helix 34
34
C
180 183Right-handed 310
Helix 35
35
C
184 190Right-handed alpha
Helix 36
36
C
192 208Right-handed alpha
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There are 4 sheets in PDB entry 4E38. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
86 88parallel
Strand 3
A
64 68parallel
Strand 4
A
39 43parallel
Strand 5
A
13 17parallel
Strand 6
A
177 179parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
127 130parallel
Strand 3
A
153 156parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
127 130parallel
Strand 3
B
106 111parallel
Strand 4
B
86 89parallel
Strand 5
B
64 68parallel
Strand 6
B
39 43parallel
Strand 7
B
13 17parallel
Strand 8
B
177 179parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 156first strand
Strand 2
C
127 130parallel
Strand 3
C
106 111parallel
Strand 4
C
86 89parallel
Strand 5
C
64 68parallel
Strand 6
C
39 43parallel
Strand 7
C
13 17parallel
Strand 8
C
177 179parallel
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