Analysis of interatomic Contacts of Structural Units in PDB entry:
4E6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E6Y entry

There is 1 chain in PDB entry 4E6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ARG 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 4E6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 39Right-handed 310
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
74 81Right-handed alpha
Helix 4
4
A
82 93Right-handed alpha
Helix 5
5
A
97 111Right-handed alpha
Helix 6
6
A
115 121Right-handed alpha
Helix 7
7
A
122 125Right-handed 310
Helix 8
8
A
130 147Right-handed alpha
Helix 9
9
A
148 150Right-handed 310
Helix 10
10
A
154 182Right-handed alpha
Helix 11
11
A
193 204Right-handed alpha
Helix 12
12
A
213 227Right-handed alpha
Helix 13
13
A
233 244Right-handed alpha
Helix 14
14
A
248 262Right-handed alpha
Helix 15
15
A
262 267Right-handed alpha
Helix 16
16
A
267 280Right-handed alpha
Helix 17
17
A
281 283Right-handed 310
Helix 18
18
A
284 294Right-handed alpha
Helix 19
19
A
313 331Right-handed alpha
Helix 20
20
A
334 348Right-handed alpha
Helix 21
21
A
350 356Right-handed alpha
Helix 22
22
A
361 373Right-handed alpha
Helix 23
23
A
376 378Right-handed 310
Helix 24
24
A
379 402Right-handed alpha
Helix 25
25
A
424 428Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 4E6Y. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
72 73anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il