Analysis of interatomic Contacts of Structural Units in PDB entry:
4E79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4E79 entry

There are 3 chains in PDB entry 4E79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5LEU 350
B
 GLN 6ASN 355
C
 VAL 5SER 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4E79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
48 50Right-handed 310
Helix 3
3
A
51 58Right-handed alpha
Helix 4
4
A
66 72Right-handed alpha
Helix 5
5
A
84 94Right-handed alpha
Helix 6
6
A
315 329Right-handed alpha
Helix 7
7
A
334 349Right-handed alpha
Helix 8
8
B
10 17Right-handed alpha
Helix 9
9
B
48 50Right-handed 310
Helix 10
10
B
51 57Right-handed alpha
Helix 11
11
B
66 72Right-handed alpha
Helix 12
12
B
84 94Right-handed alpha
Helix 13
13
B
315 327Right-handed alpha
Helix 14
14
B
328 331Right-handed 310
Helix 15
15
B
332 354Right-handed alpha
Helix 16
16
C
10 17Right-handed alpha
Helix 17
17
C
48 50Right-handed 310
Helix 18
18
C
51 58Right-handed alpha
Helix 19
19
C
66 71Right-handed alpha
Helix 20
20
C
84 97Right-handed alpha
Helix 21
21
C
315 328Right-handed alpha
Helix 22
22
C
329 331Right-handed 310
Helix 23
23
C
335 349Right-handed alpha
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There are 19 sheets in PDB entry 4E79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
28 29anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
78 81anti-parallel
Strand 3
A
62 65parallel
Strand 4
A
42 45parallel
Strand 5
A
31 32parallel
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There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
122 123parallel
Strand 3
A
140 141parallel
Strand 4
A
158 159parallel
Strand 5
A
176 177parallel
Strand 6
A
213 214parallel
Strand 7
A
235 236parallel
Strand 8
A
253 254parallel
Strand 9
A
271 272parallel
Strand 10
A
288 290parallel
Strand 11
A
304 307parallel
Strand 12
C
313 314anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
128 129parallel
Strand 3
A
146 147parallel
Strand 4
A
164 165parallel
Strand 5
A
182 183parallel
Strand 6
A
219 220parallel
Strand 7
A
241 242parallel
Strand 8
A
259 260parallel
Strand 9
A
277 278parallel
Strand 10
A
295 296parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
134 135parallel
Strand 3
A
152 153parallel
Strand 4
A
170 171parallel
Strand 5
A
206 208parallel
Strand 6
A
228 230parallel
Strand 7
A
247 248parallel
Strand 8
A
265 266parallel
Strand 9
A
283 284parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
196 199anti-parallel
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There are 12 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
B
304 307anti-parallel
Strand 3
B
288 290parallel
Strand 4
B
271 272parallel
Strand 5
B
253 254parallel
Strand 6
B
235 236parallel
Strand 7
B
213 214parallel
Strand 8
B
176 177parallel
Strand 9
B
158 159parallel
Strand 10
B
140 141parallel
Strand 11
B
122 123parallel
Strand 12
B
104 105parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
28 29anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
79 81anti-parallel
Strand 3
B
62 65parallel
Strand 4
B
42 45parallel
Strand 5
B
31 32parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
128 129parallel
Strand 3
B
146 147parallel
Strand 4
B
164 165parallel
Strand 5
B
182 183parallel
Strand 6
B
219 220parallel
Strand 7
B
241 242parallel
Strand 8
B
259 260parallel
Strand 9
B
277 278parallel
Strand 10
B
295 296parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
134 135parallel
Strand 3
B
152 153parallel
Strand 4
B
170 171parallel
Strand 5
B
205 208parallel
Strand 6
B
227 230parallel
Strand 7
B
247 248parallel
Strand 8
B
265 266parallel
Strand 9
B
283 284parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
196 199anti-parallel
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There are 12 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
C
304 307anti-parallel
Strand 3
C
288 290parallel
Strand 4
C
271 272parallel
Strand 5
C
253 254parallel
Strand 6
C
235 236parallel
Strand 7
C
213 214parallel
Strand 8
C
176 177parallel
Strand 9
C
158 159parallel
Strand 10
C
140 141parallel
Strand 11
C
122 123parallel
Strand 12
C
104 105parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
28 29anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 22first strand
Strand 2
C
79 81anti-parallel
Strand 3
C
62 65parallel
Strand 4
C
42 45parallel
Strand 5
C
31 32parallel
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There are 10 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
110 111first strand
Strand 2
C
128 129parallel
Strand 3
C
146 147parallel
Strand 4
C
164 165parallel
Strand 5
C
182 185parallel
Strand 6
C
219 221parallel
Strand 7
C
241 242parallel
Strand 8
C
259 260parallel
Strand 9
C
277 278parallel
Strand 10
C
295 296parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
134 135parallel
Strand 3
C
152 153parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
205 208parallel
Strand 3
C
227 230parallel
Strand 4
C
247 248parallel
Strand 5
C
265 266parallel
Strand 6
C
283 284parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
196 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il